Registry FamPlex

FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.

Prefix: fplx
Alternative Prefixes: famplex
Keywords: ontology
License: CC0-1.0
Links: Homepage
Contact: Benjamin M. Gyori 0000-0001-9439-5346 bgyori
Pattern for Local Unique Identifiers: Local identifiers in FamPlex should match this regular expression:
^[a-zA-Z0-9][A-Za-z0-9_]+$
Example Local Unique Identifier: GPIb_IX_V Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from FamPlex should match this regular expression:
^fplx:[a-zA-Z0-9][A-Za-z0-9_]+$
Example CURIE: fplx:GPIb_IX_V
Publications: 2018 FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining

Metaregistry FamPlex

The metaregistry provides mappings between the Semantic Farm and other registries. There are 5 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`FPLX`
BioContext	`biocontext`	`FPLX`
BioPortal	`bioportal`	`FPLX`
Identifiers.org	`miriam`	`fplx`
N2T	`n2t`	`fplx`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GPIb_IX_V is used to demonstrate the providers available for FamPlex. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
FamPlex	`fplx`	https://sorgerlab.github.io/famplex/GPIb_IX_V
Bioregistry	`bioregistry`	https://bioregistry.io/fplx:GPIb_IX_V
Identifiers.org	`miriam`	https://identifiers.org/fplx:GPIb_IX_V
Name-to-Thing	`n2t`	https://n2t.net/fplx:GPIb_IX_V

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("famplex")
'fplx'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("fplx")
{'famplex'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("fplx")
'FamPlex'

Get the license:

>>> import bioregistry as br
>>> br.get_license("fplx")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("fplx")
'https://sorgerlab.github.io/famplex/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("fplx")
'Benjamin M. Gyori'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("fplx")
'benjamin_gyori@hms.harvard.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("fplx")
'bgyori'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("fplx")
'0000-0001-9439-5346'