FlyBase is the database of the Drosophila Genome Projects and of associated literature.

Prefix

flybase

Preferred Prefix

FlyBase

Alternative Prefixes

FlyBase FB

Keywords

allele anatomy bio.tools bioinformatics blast comparative genomics controlled term dna drosophilidae expression faseb list functional genomics gene genetics genome genomics genotype image image collection interaction life science life-cycle molecular biology molecular genetics movie mutant phenotype rna-seq sequence stock video resource

License

CC-BY-4.0

Links

Homepage

Contact

Victoria K. Jenkins   0000-0002-1567-7626

Pattern for Local Unique Identifiers

Local identifiers in FlyBase Gene should match this regular expression:
^FB\w{2}\d{7}$

Example Local Unique Identifier

FBgn0011293   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from FlyBase Gene should match this regular expression:
^FlyBase:FB\w{2}\d{7}$

Example CURIE

FlyBase:FBgn0011293

Publications

• 1999 The FlyBase database of the Drosophila Genome Projects and community literature
• 1998 FlyBase: a Drosophila database
• 1997 FlyBase: a Drosophila database. The FlyBase consortium
• 1996 FlyBase: the Drosophila database
• https://bioregistry.io/pubmed:8578603
• 1994 FlyBase--the Drosophila database. The FlyBase Consortium
• 1994 FlyBase--the Drosophila genetic database
• 2021 FlyBase: updates to the Drosophila melanogaster knowledge base
• 2019 FlyBase 2.0: the next generation
• 2018 Using FlyBase to Find Functionally Related Drosophila Genes
• 2016 Exploring FlyBase Data Using QuickSearch
• 2016 FlyBase at 25: looking to the future
• 2016 FlyBase portals to human disease research using Drosophila models
• 2015 FlyBase: establishing a Gene Group resource for Drosophila melanogaster
• 2015 Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
• 2015 Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
• 2014 FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
• 2013 FlyBase 102--advanced approaches to interrogating FlyBase
• 2012 Directly e-mailing authors of newly published papers encourages community curation
• 2011 FlyBase 101--the basics of navigating FlyBase
• 2008 FlyBase: enhancing Drosophila Gene Ontology annotations
• 2008 FlyBase : a database for the Drosophila research community
• 2007 FlyBase: integration and improvements to query tools
• 2006 FlyBase: genomes by the dozen
• 2006 FlyBase: anatomical data, images and queries
• 2005 FlyBase: genes and gene models
• 2003 The FlyBase database of the Drosophila genome projects and community literature
• 2002 The FlyBase database of the Drosophila genome projects and community literature
• https://bioregistry.io/pubmed:11465064
• FlyBase: enhancing Drosophila Gene Ontology annotations.

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

Global Biodata Coalition - Global Core Biodata Resources Synapse.org external links

The metaregistry provides mappings between the Semantic Farm and other registries. There are 15 mappings to external registries for this resource with 9 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FBgn0011293 is used to demonstrate the providers available for FlyBase Gene. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.