Registry Functional Genome Annotations with Transcriptional Activities

Functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers.

Prefix
fanta
Links
Homepage Request Discussion
Publications
2024 Update of the FANTOM web resource: enhancement for studying noncoding genomes
Identifier Standards
Pattern for Local Unique Identifiers

Local identifiers in Functional Genome Annotations with Transcriptional Activities should match this regular expression:
^FC(HS|MM)_\d+$

Example Local Unique Identifier
FCHS_301358   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Functional Genome Annotations with Transcriptional Activities should match this regular expression:
^fanta:FC(HS|MM)_\d+$

Example CURIE
fanta:FCHS_301358
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FCHS_301358 is used to demonstrate the providers available for Functional Genome Annotations with Transcriptional Activities. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name Metaprefix URI
Functional Genome Annotations with Transcriptional Activities fanta https://fanta.bio/cre/FCHS_301358
Bioregistry bioregistry https://bioregistry.io/fanta:FCHS_301358