EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure

Prefix

empiar

Keywords

bioimaging bioinformatics biology electron microscopy imaging microscopy protein image structural biology whole mount tissue x-ray diffraction

Links

Homepage

Publications

2016 EMPIAR: a public archive for raw electron microscopy image data

2022 EMPIAR: the Electron Microscopy Public Image Archive

Pattern for Local Unique Identifiers

Local unique identifiers in Electron Microscopy Public Image Archive should match this regular expression:
^\d+$

Example Local Unique Identifier

10595   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Electron Microscopy Public Image Archive should match this regular expression:
^empiar:\d+$

Example CURIE

empiar:10595

Namespace Embedded in LUI

This resource has been annotated by the Semantic Farm as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For , the banana looks like EMPIAR-. Therefore, you may see local unique identifiers for this resource that look like EMPIAR-10595 (instead of the canonical form 10595) and CURIEs for this resource that look like empiar:EMPIAR-10595 (instead of the canonical form empiar:10595). The Semantic Farm will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Contact

Ardan Patwardhan   0000-0001-7663-9028

Identifier Space Owner

European Bioinformatics Institute

Contributor

creator Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (2)

Resources mentioned in "Sharing biological data: why, when, and how" Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 10595 is used to demonstrate the providers available for Electron Microscopy Public Image Archive. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.