EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.

Prefix

ecoliwiki

Keywords

bioinformatics genomics life science ontology and terminology

Links

Homepage

Contact

Peter D. Karp   0000-0002-5876-6418   pkarp111

Pattern for Local Unique Identifiers

Local identifiers in EcoliWiki from EcoliHub should match this regular expression:
^[A-Za-z0-9-]+$

Example Local Unique Identifier

aaeA   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from EcoliWiki from EcoliHub should match this regular expression:
^ecoliwiki:[A-Za-z0-9-]+$

Example CURIE

ecoliwiki:aaeA

Publications

2009 What we can learn about Escherichia coli through application of Gene Ontology

The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier aaeA is used to demonstrate the providers available for EcoliWiki from EcoliHub. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.