The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms.

Prefix

dbest

Keywords

bioinformatics dna life science

Links

Homepage

Contact

Todd M Lowe   0000-0003-3253-6021

Pattern for Local Unique Identifiers

Local identifiers in EST database maintained at the NCBI. should match this regular expression:
^([A-Z]+)?\d+(\.\d+)?$

Example Local Unique Identifier

BP100000   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from EST database maintained at the NCBI. should match this regular expression:
^dbest:([A-Z]+)?\d+(\.\d+)?$

Example CURIE

dbest:BP100000

Publications

1993 dbEST--database for "expressed sequence tags"

A summary of the relations in the Semantic Farm schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with dbest:
bdgp.est

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for dbest. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Semantic Farm issue tracker for discussion.

The metaregistry provides mappings between the Semantic Farm and other registries. There are 9 mappings to external registries for this resource with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier BP100000 is used to demonstrate the providers available for EST database maintained at the NCBI.. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.