Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.

Comment

website down as of 2021-10-04

Prefix

cubedb

Keywords

genome/gene sequence

Links

Homepage

Publications

https://bioregistry.io/pubmed:22139934

https://bioregistry.io/pubmed:21931701

Pattern for Local Unique Identifiers

Local identifiers in Cube db should match this regular expression:
^[A-Za-z_0-9]+$

Example Local Unique Identifier

AKR   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Cube db should match this regular expression:
^cubedb:[A-Za-z_0-9]+$

Example CURIE

cubedb:AKR

Contact

Missing Contact

Identifier Space Owner

BII Bioinformatics Institute

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AKR is used to demonstrate the providers available for Cube db. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.