Contains identifiers of cohesin-related chromatin loops from CohesinDB. CohesinDB includes 2043 epigenomics, transcriptomics and 3D genomics datasets from 530 studies involving 176 cell types. Each identifier represents a single cohesin-related chromatin loop. Each cohesin object is annotated with locus, cell type, classification, function, 3D genomics and cis-regulatory information.

Prefix

cohesindb.loops

Keywords

chromatin loop cohesin interaction protein

Links

Homepage Request Discussion

Contact

Ryuichiro Nakato   0000-0003-3019-5817

Pattern for Local Unique Identifiers

Local identifiers in CohesinDB - cohesin-related chromatin loop should match this regular expression:
^CDBL00\d{6}$

Example Local Unique Identifier

CDBL00540805   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from CohesinDB - cohesin-related chromatin loop should match this regular expression:
^cohesindb\.loops:CDBL00\d{6}$

Example CURIE

cohesindb.loops:CDBL00540805

Publications

2023 CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells

Contributors

• submitter Maaya Manoj   0009-0000-6974-6386   maayamanoj466

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CDBL00540805 is used to demonstrate the providers available for CohesinDB - cohesin-related chromatin loop. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.