Registry COlleCtion of Open Natural ProdUcTs

COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a "flat" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties.

Comment: @mSorok is the dev of the resource, hope I got it right!
Prefix: coconut
Keywords: chemical biology cheminformatics chemistry drug discovery natural producs natural product organic chemistry
License: CC0-1.0
Links: Homepage Request Discussion
Publications: 2024 COCONUT 2.0: a comprehensive overhaul and curation of the collection of open natural products database; 2021 COCONUT online: Collection of Open Natural Products database

Identifier Standards

Pattern for Local Unique Identifiers: Local unique identifiers in COlleCtion of Open Natural ProdUcTs should match this regular expression:
^CNP\d{7}(\.\d+)?$
Example Local Unique Identifiers: CNP0171505 Resolve
CNP0018459.2 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from COlleCtion of Open Natural ProdUcTs should match this regular expression:
^coconut:CNP\d{7}(\.\d+)?$
Example CURIEs: coconut:CNP0171505
coconut:CNP0018459.2

Contacts

Contact: Christoph Steinbeck 0000-0001-6966-0814
Contributor: creator Adriano Rutz 0000-0003-0443-9902 adafede
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Mappings to External Registries

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix	Curate
FAIRSharing	`fairsharing`	`FAIRsharing.eebee4`
re3data	`re3data`	`r3d100014517`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CNP0171505 is used to demonstrate the providers available for COlleCtion of Open Natural ProdUcTs. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
COlleCtion of Open Natural ProdUcTs	`coconut`	https://coconut.naturalproducts.net/compound/coconut_id/CNP0171505
Bioregistry	`bioregistry`	https://bioregistry.io/coconut:CNP0171505

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("coconut")
'COlleCtion of Open Natural ProdUcTs'

Get the license:

>>> import bioregistry as br
>>> br.get_license("coconut")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("coconut")
'https://coconut.naturalproducts.net'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("coconut")
'Christoph Steinbeck'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("coconut")
'christoph.steinbeck@uni-jena.de'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("coconut")
'0000-0001-6966-0814'