Registry CIViC Variant Group

Logo for CIViC Variant Group Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance

Prefix: civic.vgid
Alternative Prefixes: civic.variantgroup
License: CC0-1.0
Links: Homepage Mailing List
Contact: Malachi Griffith 0000-0002-6388-446X malachig
Pattern for Local Unique Identifiers: Local identifiers in CIViC Variant Group should match this regular expression:
^[0-9]+$
Example Local Unique Identifier: 16 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from CIViC Variant Group should match this regular expression:
^civic\.vgid:[0-9]+$
Example CURIE: civic.vgid:16

Metaregistry CIViC Variant Group

The metaregistry provides mappings between the Semantic Farm and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix	Curate
Identifiers.org	`miriam`	`civic.vgid`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 16 is used to demonstrate the providers available for CIViC Variant Group. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
CIViC Variant Group	`civic.vgid`	https://civicdb.org/links/variant_group/16
Bioregistry	`bioregistry`	https://bioregistry.io/civic.vgid:16
Identifiers.org	`miriam`	https://identifiers.org/civic.vgid:16

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("civic.variantgroup")
'civic.vgid'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("civic.vgid")
{'civic.variantgroup'}

This name annotation was originally annotated in Identifiers.org and is redistributed under the CC BY 4.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("civic.vgid")
'CIViC Variant Group'

Get the license:

>>> import bioregistry as br
>>> br.get_license("civic.vgid")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("civic.vgid")
'https://civicdb.org/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("civic.vgid")
'Malachi Griffith'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("civic.vgid")
'mgriffit@wustl.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("civic.vgid")
'malachig'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("civic.vgid")
'0000-0002-6388-446X'