ChEMBL assays describe the experimental set-up when testing the activity of drug-like compounds against biological targets; they provide useful context for researchers interested in drug-target relationships (https://chembl.blogspot.com/2023/12/in-search-of-perfect-assay-description.html).

Comment

Not sure what your choices might be regarding ChEMBL and its possible sub-prefixes. The ChEMBL RDF publication at PMC3700754 describes the prefix as assay, not chembl.assay, and declares http://linkedchemistry.info/chembl/assay/ which is nowhere in current ChEMBL or PubChem releases (I think it might be from Bio2RDF). ChEMBL 36 only the form http://rdf.ebi.ac.uk/resource/chembl/assay/$1 is used (also in pubchem.bioassay via seeAlso). The example at http://bioregistry.io/registry/chembl is an assay (https://www.ebi.ac.uk/chembl/id_lookup/CHEMBL4303805). At the same time there is a https://bioregistry.io/registry/chembl.compound page, specific for compounds. What are the choices regarding ChEMBL and its parts?

Prefix

chembl.assay

Keywords

chemical information systems

License

CC-BY-SA-3.0

Links

Homepage Request Discussion

Publications

2023 The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods

2018 ChEMBL: towards direct deposition of bioassay data

2013 The ChEMBL database as linked open data

Pattern for Local Unique Identifiers

Local unique identifiers in ChEMBL assay should match this regular expression:
^CHEMBL\d+$

Example Local Unique Identifier

CHEMBL4303805   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ChEMBL assay should match this regular expression:
^chembl\.assay:CHEMBL\d+$

Example CURIE

chembl.assay:CHEMBL4303805

Format String for RDF URIs

http://rdf.ebi.ac.uk/resource/chembl/assay/$1

Example RDF URI

http://rdf.ebi.ac.uk/resource/chembl/assay/CHEMBL4303805

Contact

David Mendez Lopez   0000-0002-0294-5484   nclopezo

Contributor

creator Javier Millán Acosta   0000-0002-4166-7093   jmillanacosta

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

Part Of (bfo:0000050 )

chembl

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CHEMBL4303805 is used to demonstrate the providers available for ChEMBL assay. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.