Assigns identifiers to collections of datasets indexed by CELLxGENE.

CELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types.

Prefix

cellxgene.collection

License

CC-BY-4.0

Links

Homepage Request Discussion

Contact

Ambrose Carr   0000-0002-8457-2836   ambrosejcarr

Pattern for Local Unique Identifiers

Local identifiers in Chan Zuckerberg CELLxGENE Collection should match this regular expression:
^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$

Example Local Unique Identifier

436154da-bcf1-4130-9c8b-120ff9a888f2   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Chan Zuckerberg CELLxGENE Collection should match this regular expression:
^cellxgene\.collection:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$

Example CURIE

cellxgene.collection:436154da-bcf1-4130-9c8b-120ff9a888f2

Publications

2024 CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data

Contributors

• submitter Robert Allaway   0000-0003-3573-3565   allaway

Reviewer

Benjamin M. Gyori   0000-0001-9439-5346   bgyori

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

Synapse.org external links

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 436154da-bcf1-4130-9c8b-120ff9a888f2 is used to demonstrate the providers available for Chan Zuckerberg CELLxGENE Collection. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.