The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
- Prefix
cbioportal- Keywords
- biomedical science genomics preclinical studies proteomics
- Links
- Homepage Repository
- Publications
- 2013 Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
- 2012 The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data
- The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in The cBioPortal for Cancer Genomics should match this regular expression:
^[a-z0-9\_]+$ - Example Local Unique Identifier
- laml_tcga_pub Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from The cBioPortal for Cancer Genomics should match this regular expression:
^cbioportal:[a-z0-9\_]+$ - Example CURIE
- cbioportal:laml_tcga_pub
Contacts
- Contact
- Jianjiong Gao 0000-0002-5739-1781 jjgao
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
- In Collection
- Synapse.org external links
Metaregistry The cBioPortal for Cancer Genomics
The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.6L6MjA
|
|
Identifiers.org
|
miriam |
cbioportal
|
|
N2T
|
n2t |
cbioportal
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier laml_tcga_pub is used to demonstrate the providers
available for The cBioPortal for Cancer Genomics. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.