The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.

Prefix

biomodels.teddy

Alternative Prefixes

teddy

Keywords

neurophysiology ontology synthetic biology systems biology

Version

2014-04-24

Links

Homepage Repository OWL

Contact

Michael Hucka   0000-0001-9105-5960   mhucka

Pattern for Local Unique Identifiers

Local identifiers in Terminology for Description of Dynamics should match this regular expression:
^\d+$

Example Local Unique Identifier

0000066   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Terminology for Description of Dynamics should match this regular expression:
^biomodels\.teddy:\d+$

Example CURIE

biomodels.teddy:0000066

Namespace Embedded in LUI

This resource has been annotated by the Semantic Farm as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For , the banana looks like TEDDY_. Therefore, you may see local unique identifiers for this resource that look like TEDDY_0000066 (instead of the canonical form 0000066) and CURIEs for this resource that look like biomodels.teddy:TEDDY_0000066 (instead of the canonical form biomodels.teddy:0000066). The Semantic Farm will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Publications

2011 Controlled vocabularies and semantics in systems biology

The metaregistry provides mappings between the Semantic Farm and other registries. There are 8 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000066 is used to demonstrate the providers available for Terminology for Description of Dynamics. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.