A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.
- Prefix
biolink- Preferred Prefix
biolink- Keywords
- biomedical science functional genomics medical biotechnology medical informatics ontology translational medicine
- License
- CC0-1.0
- Links
- Homepage Repository OWL RDF
- Contact
- Chris Mungall 0000-0002-6601-2165 cmungall
- Pattern for Local Unique Identifiers
-
Local identifiers in Biolink Model should match this regular expression:
^\S+$ - Example Local Unique Identifier
- Gene Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Biolink Model should match this regular expression:
^biolink:\S+$ - Example CURIE
- biolink:Gene
Metaregistry Biolink Model
The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
BIOLINK
|
|
Biolink
|
biolink |
biolink
|
|
BioPortal
|
bioportal |
BIOLINK
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.ad9d85
|
|
Identifiers.org
|
miriam |
biolink
|
|
OLS
|
ols |
biolink
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier Gene is used to demonstrate the providers
available for Biolink Model. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Biolink Model | biolink |
https://w3id.org/biolink/vocab/Gene |
| Bioregistry | bioregistry |
https://bioregistry.io/biolink:Gene |
| Identifiers.org | miriam |
https://identifiers.org/biolink:Gene |