Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.

Prefix

bgee.gene

Keywords

gene expression

Links

Homepage

Contact

Sébastien Moretti   0000-0003-3947-488X   smoretti

Pattern for Local Unique Identifiers

Local identifiers in Bgee gene should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier

FBgn0000015   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Bgee gene should match this regular expression:
^bgee\.gene:[A-Za-z0-9]+$

Example CURIE

bgee.gene:FBgn0000015

References

GitHub Issue https://github.com/biopragmatics/bioregistry/issues/890

Contributors

• contributor Sébastien Moretti   0000-0003-3947-488X   smoretti

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

Synapse.org external links

The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FBgn0000015 is used to demonstrate the providers available for Bgee gene. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.