BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.

Prefix

bacdive

Keywords

biodiversity life science microbiology

Links

Homepage Mailing List

Contact

Lorenz Reimer   0000-0002-7805-0660

Pattern for Local Unique Identifiers

Local identifiers in BacDive should match this regular expression:
^[0-9]+$

Example Local Unique Identifier

131392   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BacDive should match this regular expression:
^bacdive:[0-9]+$

Example CURIE

bacdive:131392

Publications

• 2019 BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis
• 2017 Mobilization and integration of bacterial phenotypic data-Enabling next generation biodiversity analysis through the BacDive metadatabase
• 2015 BacDive--The Bacterial Diversity Metadatabase in 2016
• 2013 BacDive--the Bacterial Diversity Metadatabase

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

Global Biodata Coalition - Global Core Biodata Resources Synapse.org external links

The metaregistry provides mappings between the Semantic Farm and other registries. There are 5 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 131392 is used to demonstrate the providers available for BacDive. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.