The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.
- Prefix
atfdb.family- Keywords
- genome regulation
- Links
- Homepage
- Publications
- https://bioregistry.io/pubmed:21059685
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Animal TFDB Family should match this regular expression:
^\w+$ - Example Local Unique Identifier
- CUT Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Animal TFDB Family should match this regular expression:
^atfdb\.family:\w+$ - Example CURIE
- atfdb.family:CUT
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
ATFDB.FAMILY
|
|
Identifiers.org
|
miriam |
atfdb.family
|
|
N2T
|
n2t |
atfdb.family
|
|
Prefix Commons
|
prefixcommons |
atfdb.family
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CUT is used to demonstrate the providers
available for Animal TFDB Family. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Animal TFDB Family | atfdb.family |
https://guolab.wchscu.cn/AnimalTFDB4//#/family_summary/TF/CUT |
| Bioregistry | bioregistry |
https://bioregistry.io/atfdb.family:CUT |
| Identifiers.org | miriam |
https://identifiers.org/atfdb.family:CUT |
| Name-to-Thing | n2t |
https://n2t.net/atfdb.family:CUT |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/atfdb.family:CUT |