Registry Antimicrobial Peptide Database

The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.

Prefix

apd

Keywords

biology protein

Links

Homepage

Contact

Guangshun Wang 0000-0002-4841-7927

Pattern for Local Unique Identifiers

Local identifiers in Antimicrobial Peptide Database should match this regular expression:
^\d{5}$

Example Local Unique Identifier

01001 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Antimicrobial Peptide Database should match this regular expression:
^apd:\d{5}$

Example CURIE

apd:01001

Publications

Metaregistry Antimicrobial Peptide Database

The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`APD`
FAIRSharing	`fairsharing`	`FAIRsharing.ctwd7b`
Identifiers.org	`miriam`	`apd`
N2T	`n2t`	`apd`
Prefix Commons	`prefixcommons`	`apd`
re3data	`re3data`	`r3d100012901`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 01001 is used to demonstrate the providers available for Antimicrobial Peptide Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Antimicrobial Peptide Database	`apd`	http://aps.unmc.edu/AP/database/query_output.php?ID=01001
Bioregistry	`bioregistry`	https://bioregistry.io/apd:01001
Identifiers.org	`miriam`	https://identifiers.org/apd:01001
Name-to-Thing	`n2t`	https://n2t.net/apd:01001

Extra Providers

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/apd:01001

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("apd")
'Antimicrobial Peptide Database'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("apd")
'http://aps.unmc.edu/AP/'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("apd")
'Guangshun Wang'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("apd")
'gwang@unmc.edu'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("apd")
'0000-0002-4841-7927'