The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.
genecards.geneA summary of the relations in the Semantic Farm schema can be found here.
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 8 mappings to external registries with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GENECARDS
|
|
|
FAIRsharing
|
fairsharing |
FAIRsharing.g7jbvn
|
|
Integbio
|
integbio |
nbdc00242
|
|
Identifiers.org namespace
|
miriam |
genecards
|
|
| N2T | n2t |
genecards
|
|
| Prefix Commons | prefixcommons |
genecards
|
|
re3data
|
re3data |
r3d100012015
|
|
|
UniProt
|
uniprot.resource |
DB-0030
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ABL1 is used to demonstrate the providers
available for GeneCards Gene. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| GeneCards Gene | genecards.gene |
https://www.genecards.org/card/ABL1 |
| Bioregistry | bioregistry |
https://bioregistry.io/genecards.gene:ABL1 |
| Identifiers.org namespace | miriam |
https://identifiers.org/genecards:ABL1 |
| Name-to-Thing | n2t |
https://n2t.net/genecards:ABL1 |
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/genecards:ABL1 |
| Legacy | legacy |
https://www.genecards.org/cgi-bin/carddisp.pl?gene=ABL1 |