appears_in: []
depends_on: []
deprecated: false
description: ZFIN serves as the zebrafish model organism database. This collection
  references all zebrafish biological entities in ZFIN.
download_json: https://w3id.org/biopragmatics/resources/zfin/zfin.json.gz
download_obo: https://w3id.org/biopragmatics/resources/zfin/zfin.obo
download_owl: https://w3id.org/biopragmatics/resources/zfin/zfin.owl.gz
example: ZDB-GENE-041118-11
example_extras: []
homepage: http://zfin.org
keywords:
- adult
- antibody
- bibliography/documents
- bioresource
- cdna
- cdna/est
- embryo
- expressed sequence tag
- expression
- fish
- gene
- genetic variation
- genome
- genome/gene
- ontology
- ontology/terminology/nomenclature
- organism
- organism-specific databases
- pathology
- protein
- repository
- research
- sequence
- zebrafish
- zebrafish line
license: CC-BY-4.0
logo: https://zfin.org/images/zfinlogo_lg.gif
mappings:
  biocontext: ZFIN
  go: ZFIN
  integbio: nbdc00746
  miriam: zfin
  n2t: zfin
  ncbi: ZFIN
  prefixcommons: zfin
  re3data: r3d100010421
  rrid: ZIRC
  uniprot: DB-0113
  wikidata: P3870
name: Zebrafish Information Network Gene
namespace_in_lui: false
pattern: ^ZDB\-\w+\-\d+\-\d+$
preferred_prefix: zfin
prefix: zfin
providers:
- code: agr
  description: ZFIN through the Alliance of Genome Resources
  homepage: https://www.alliancegenome.org
  name: ZFIN through the Alliance of Genome Resources
  uri_format: https://test.alliancegenome.org/gene/ZFIN:$1
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/zfin:$1
publications:
- doi: 10.1093/genetics/iyac016
  pubmed: '35166825'
- doi: 10.1093/nar/gky1090
  pmc: PMC6323962
  pubmed: '30407545'
  title: 'The Zebrafish Information Network: new support for non-coding genes, richer
    Gene Ontology annotations and the Alliance of Genome Resources'
  year: 2019
- doi: 10.1093/nar/gks938
  pubmed: '23074187'
  title: 'ZFIN, the Zebrafish Model Organism Database: increased support for mutants
    and transgenics'
- doi: 10.1016/b978-0-12-374814-0.00017-3
  pubmed: '21924170'
  title: Data extraction, transformation, and dissemination through ZFIN
- doi: 10.1093/nar/gkq1077
  pubmed: '21036866'
  title: 'ZFIN: enhancements and updates to the Zebrafish Model Organism Database'
- doi: 10.1002/0471250953.bi0118s31.
  pubmed: '20836073'
  title: Exploring zebrafish genomic, functional and phenotypic data using ZFIN
- doi: 10.1093/nar/gkm956
  pmc: PMC2238839
  pubmed: '17991680'
  title: 'The Zebrafish Information Network: the zebrafish model organism database
    provides expanded support for genotypes and phenotypes'
  year: 2007
- doi: 10.1093/nar/gkj086
  pubmed: '16381936'
  title: 'The Zebrafish Information Network: the zebrafish model organism database'
- doi: 10.1093/nar/gkg027
  pubmed: '12519991'
  title: 'The Zebrafish Information Network (ZFIN): the zebrafish model organism database'
- doi: 10.1016/s0168-9525(99)01741-2
  pubmed: '10354586'
  title: Zebrafish in the Net
synonyms:
- ZFIN
uri_format: http://zfin.org/$1
