appears_in: []
contact:
  email: agb@ebi.ac.uk
  github: bateman-research
  name: Alex Bateman
  orcid: 0000-0002-6982-4660
contributor_extras:
- email: m.naguthana@hotmail.com
  github: nagutm
  name: Mufaddal Naguthanawala
  orcid: 0009-0009-5240-7463
depends_on: []
deprecated: false
description: The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for
  protein sequence and functional information with extensive cross-references to more
  than 120 external databases. Besides amino acid sequence and a description, it also
  provides taxonomic data and citation information.
download_json: https://w3id.org/biopragmatics/resources/uniprot/uniprot.json.gz
download_obo: https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo.gz
download_owl: https://w3id.org/biopragmatics/resources/uniprot/uniprot.owl.gz
example: P0DP23
example_extras: []
homepage: http://www.uniprot.org
keywords:
- biology
- ontology
- protein
- repository
- sequence
- taxonomic classification
license: CC-BY-4.0
logo: https://www.uniprot.org/uniprot-logo.img.0df091.svg
mappings:
  aberowl: UP
  biocontext: UniProtKB
  biolink: UniProtKB
  cellosaurus: UniProtKB
  edam: '3021'
  fairsharing: FAIRsharing.wf28wm
  go: UniProtKB
  integbio: nbdc00221
  miriam: uniprot
  n2t: uniprot
  ncbi: UniProt
  prefixcommons: uniprot
  re3data: r3d100011521
  togoid: Uniprot
  wikidata: P352
name: UniProt Protein
namespace_in_lui: false
owners:
- name: The Uniprot Consortium
  ror: 017yq1n41
pattern: ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z,
  0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?(-\d+)?(#PRO_\d+)?$
preferred_prefix: uniprot
prefix: uniprot
providers:
- code: aipd
  description: A curated database standardizing information on autoinhibited proteins.
  homepage: http://ssbio.cau.ac.kr/databases/AiPD/
  name: Autoinhibited Protein Database
  publications:
  - doi: 10.1093/database/baae085
    pmc: PMC11349611
    pubmed: '39192607'
    title: 'Autoinhibited Protein Database: a curated database of autoinhibitory domains
      and their autoinhibition mechanisms'
    year: 2024
  uri_format: http://165.194.60.211:9006/detail/$1
- code: bfvd
  description: Predicted protein structures for viral sequences
  homepage: https://bfvd.foldseek.com
  name: Big Fantastic Virus Database
  publications:
  - doi: 10.1093/nar/gkae1119
    pubmed: '39574394'
    title: BFVD-a large repository of predicted viral protein structures
    year: 2024
  uri_format: https://bfvd.foldseek.com/cluster/$1
- code: bio2rdf
  description: Bio2RDF is an open-source project that uses Semantic Web technologies
    to build and provide the largest network of Linked Data for the Life Sciences.
    Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked
    Data from a diverse set of heterogeneously formatted sources obtained from multiple
    data providers.
  homepage: https://bio2rdf.org
  name: Bio2RDF
  uri_format: http://bio2rdf.org/uniprot:$1
- code: describeprot
  description: Structural and functional descriptors for proteins at the amino acid
    level
  homepage: http://biomine.cs.vcu.edu/servers/DESCRIBEPROT
  name: DescribePROT
  publications:
  - doi: 10.1007/978-1-0716-4196-5_10
    pubmed: '39576581'
    title: DescribePROT Database of Residue-Level Protein Structure and Function Annotations
    year: 2024
  uri_format: http://biomine.cs.vcu.edu/servers/DESCRIBEPROT/result_v2.php?uniprot=$1
- code: drugbank
  description: DrugBank PolyPeptide.
  homepage: https://go.drugbank.com
  name: DrugBank Polypeptide
  uri_format: https://go.drugbank.com/polypeptides/$1
- code: iedb.antigen
  description: A comprehensive collection of data on immune epitopes, covering experimental
    data and resources, including antigens
  homepage: https://www.iedb.org/
  name: Immune Epitope Database
  uri_format: https://www.iedb.org/antigen/UNIPROT:$1
- code: indra
  description: A large scale database of biomedical statements.
  homepage: https://db.indra.bio
  name: INDRA Database
  uri_format: https://db.indra.bio/statements/from_agents?&format=html&agent0=$1@UP
- code: iptmnet
  description: Protein post translational modification information
  homepage: https://research.bioinformatics.udel.edu/iptmnet
  name: iPTMnet
  uri_format: https://research.bioinformatics.udel.edu/iptmnet/entry/$1
- code: ncbi
  description: UniProt through NCBI
  homepage: https://www.ncbi.nlm.nih.gov/protein/
  name: UniProt through NCBI
  uri_format: https://www.ncbi.nlm.nih.gov/protein/$1
- code: oglcnac
  description: A comprehensive catalog of O-GlcNAcylated proteins
  homepage: https://www.oglcnac.mcw.edu
  name: The O-GlcNAc Database
  publications:
  - doi: 10.1007/s00216-024-05571-8
    pubmed: '39379619'
    title: 'The O-GlcNAc database: introducing new features and tools developed from
      community feedback'
    year: 2024
  uri_format: https://www.oglcnac.mcw.edu/search/?query_protein=$1
- code: oma
  description: The OMA project is a method and database for the inference of orthologs
    among complete genomes.
  homepage: https://omabrowser.org/oma/home/
  name: Orthologous Matrix Browser
  uri_format: http://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p2=orthologs&p1=$1
- code: omnipath
  description: Molecular interations endpoint from OmniPathDB
  homepage: https://omnipathdb.org/
  name: OmniPathDB
  uri_format: https://omnipathdb.org/interactions/?fields=sources,references&partners=$1
- code: pharos
  description: Part of the Illuminating the Druggable Genome project
  homepage: https://pharos.nih.gov/idg
  name: Pharos
  uri_format: https://pharos.nih.gov/idg/targets/$1
- code: proteinsplus
  description: Database of protein-ligand interactions.
  homepage: https://proteins.plus/
  name: ProteinsPlus
  publications:
  - doi: 10.1093/nar/gkaf377
    pubmed: '40326518'
    title: 'ProteinsPlus: a publicly available resource for protein structure mining'
    year: 2025
  uri_format: https://proteins.plus/$1
- code: scholia
  description: Scholia is a service that creates visual scholarly profiles for topic,
    people, organizations, species, chemicals, etc using bibliographic and other information
    in Wikidata.
  homepage: https://scholia.toolforge.org/
  name: Scholia
  uri_format: https://scholia.toolforge.org/uniprot/$1
publications:
- doi: 10.1093/nar/gkaf377
  pubmed: '40326518'
  title: 'ProteinsPlus: a publicly available resource for protein structure mining'
  year: 2025
- doi: 10.1007/978-1-0716-4196-5_10
  pubmed: '39576581'
  title: DescribePROT Database of Residue-Level Protein Structure and Function Annotations
  year: 2024
- doi: 10.1093/nar/gkae1119
  pubmed: '39574394'
  title: BFVD-a large repository of predicted viral protein structures
  year: 2024
- doi: 10.1093/nar/gkae1010
  pubmed: '39552041'
  title: 'UniProt: the Universal Protein Knowledgebase in 2025'
  year: 2024
- doi: 10.1007/s00216-024-05571-8
  pubmed: '39379619'
  title: 'The O-GlcNAc database: introducing new features and tools developed from
    community feedback'
  year: 2024
- doi: 10.1093/database/baae085
  pmc: PMC11349611
  pubmed: '39192607'
  title: 'Autoinhibited Protein Database: a curated database of autoinhibitory domains
    and their autoinhibition mechanisms'
  year: 2024
- doi: 10.1093/nar/gkj161
  pmc: PMC1347523
  pubmed: '16381842'
  title: 'The Universal Protein Resource (UniProt): an expanding universe of protein
    information'
  year: 2006
rdf_uri_format: http://purl.uniprot.org/uniprot/$1
synonyms:
- SwissProt
- UP
- UniProt
- UniProtKB
- Uniprot ID
- uniprot/swiss-prot
uri_format: http://purl.uniprot.org/uniprot/$1
