{"prefix":"plasmodb","name":"PlasmoDB","description":"AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.","pattern":"^\\w+$","uri_format":"http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/plasmodb:$1"}],"homepage":"http://plasmodb.org/plasmo/","contact":{"name":"Omar S. Harb","orcid":"0000-0003-4446-6200","email":"oharb@upenn.edu","github":"ramobrah"},"example":"PF11_0344","example_extras":[],"deprecated":false,"mappings":{"biocontext":"PLASMODB","go":"PlasmoDB","integbio":"nbdc01783","miriam":"plasmodb","n2t":"plasmodb","ncbi":"ApiDB_PlasmoDB","pathguide":"514","prefixcommons":"plasmodb","re3data":"r3d100011569"},"synonyms":["ApiDB_PlasmoDB"],"keywords":["cdna/est","expression","genome","genome/gene","health/disease","ontology/terminology/nomenclature","organism","sequence"],"publications":[{"pubmed":"18957442","doi":"10.1093/nar/gkn814","pmc":"PMC2686598","title":"PlasmoDB: a functional genomic database for malaria parasites","year":2008}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"plasmodb","logo":"https://sites.psu.edu/llinaslab/files/2020/05/plasmodb_logogif-e1590176740521.jpg"}