appears_in: []
contact:
  email: mbaudis@me.com
  github: mbaudis
  name: Michael Baudis
  orcid: 0000-0002-9903-4248
depends_on: []
deprecated: false
description: The Progenetix database provides an overview of mutation data in cancer,
  with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies.
  The resource contains genome profiles of more than 130'000 individual samples and
  represents about 700 cancer types, according to the NCIt "neoplasm" classification.
  Additionally to this genome profiles and associated metadata, the website present
  information about thousands of publications referring to cancer genome profiling
  experiments, and services for mapping cancer classifications and accessing supplementary
  data through its APIs.
example: pgxbs-kftva5zv
example_extras: []
homepage: https://progenetix.org/
keywords:
- biomedical science
- genomics
mappings:
  biocontext: PGX
  cellosaurus: Progenetix
  fairsharing: FAIRsharing.65tdnz
  miriam: pgx
  n2t: pgx
  re3data: r3d100012820
name: Progenetix
namespace_in_lui: false
pattern: ^\w{3,15}[-_]\w[\w.-]{3,128}$
preferred_prefix: pgx
prefix: pgx
providers: []
publications:
- doi: 10.1093/nar/gku1123
  pmc: PMC4383937
  pubmed: '25428357'
  title: 'arrayMap 2014: an updated cancer genome resource'
  year: 2014
- doi: 10.1186/1471-2164-15-82
  pmc: PMC3909908
  pubmed: '24476156'
  title: Chromothripsis-like patterns are recurring but heterogeneously distributed
    features in a survey of 22,347 cancer genome screens
  year: 2014
- doi: 10.1093/nar/gkt1108
  pmc: PMC3965091
  pubmed: '24225322'
  title: 'Progenetix: 12 years of oncogenomic data curation'
  year: 2013
- doi: 10.1371/journal.pone.0036944
  pmc: PMC3356349
  pubmed: '22629346'
  title: 'arrayMap: a reference resource for genomic copy number imbalances in human
    malignancies'
  year: 2012
- doi: 10.1186/1471-2407-7-226
  pmc: PMC2225423
  pubmed: '18088415'
  title: 'Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis
    of chromosomal CGH data'
  year: 2007
- doi: 10.2144/000112102
  pubmed: '16568815'
  title: Online database and bioinformatics toolbox to support data mining in cancer
    cytogenetics
  year: 2006
- doi: 10.1093/bioinformatics/17.12.1228
  pubmed: '11751233'
  title: 'Progenetix.net: an online repository for molecular cytogenetic aberration
    data'
  year: 2001
synonyms:
- Progenetix
twitter: progenetix
uri_format: https://progenetix.org/services/ids/$1
