{"prefix":"pgx","name":"Progenetix","description":"The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.","pattern":"^\\w{3,15}[-_]\\w[\\w.-]{3,128}$","uri_format":"https://progenetix.org/services/ids/$1","providers":[],"homepage":"https://progenetix.org/","owners":[{"ror":"02crff812","name":"University of Zurich"}],"example":"pgxbs-kftva5zv","example_extras":[],"deprecated":false,"mappings":{"biocontext":"PGX","cellosaurus":"Progenetix","miriam":"pgx","n2t":"pgx","re3data":"r3d100012820"},"synonyms":["Progenetix"],"keywords":[],"publications":[{"pubmed":"25428357","doi":"10.1093/nar/gku1123","pmc":"PMC4383937","title":"arrayMap 2014: an updated cancer genome resource","year":2014},{"pubmed":"24476156","doi":"10.1186/1471-2164-15-82","pmc":"PMC3909908","title":"Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens","year":2014},{"pubmed":"24225322","doi":"10.1093/nar/gkt1108","pmc":"PMC3965091","title":"Progenetix: 12 years of oncogenomic data curation","year":2013},{"pubmed":"22629346","doi":"10.1371/journal.pone.0036944","pmc":"PMC3356349","title":"arrayMap: a reference resource for genomic copy number imbalances in human malignancies","year":2012},{"pubmed":"18088415","doi":"10.1186/1471-2407-7-226","pmc":"PMC2225423","title":"Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data","year":2007},{"pubmed":"16568815","doi":"10.2144/000112102","title":"Online database and bioinformatics toolbox to support data mining in cancer cytogenetics","year":2006},{"pubmed":"11751233","doi":"10.1093/bioinformatics/17.12.1228","title":"Progenetix.net: an online repository for molecular cytogenetic aberration data","year":2001}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"pgx"}