{"prefix":"pephub","name":"PEPhub","description":"PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place.","pattern":"^[A-Za-z0-9_\\-]+(/[A-Za-z0-9_\\-]+)?$","uri_format":"https://pephub.databio.org/$1","providers":[],"homepage":"https://pephub.databio.org/","contact":{"name":"Nathan Sheffield","orcid":"0000-0001-5643-4068","email":"nsheffield@virginia.edu","github":"nsheff"},"example":"geo","example_extras":["bedbase/gse198944","databio/encode_batch_1","geo/gse185244"],"deprecated":false,"mappings":{},"synonyms":[],"keywords":[],"publications":[{"pubmed":"38991851","doi":"10.1093/gigascience/giae033","pmc":"PMC11238423","title":"PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata","year":2024}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor":{"name":"Mufaddal Naguthanawala","orcid":"0009-0009-5240-7463","email":"m.naguthana@hotmail.com","github":"nagutm"},"reviewer":{"name":"Benjamin M. Gyori","orcid":"0000-0001-9439-5346","email":"b.gyori@northeastern.edu","github":"bgyori"},"preferred_prefix":"pephub","github_request_issue":1194}