{"prefix":"orthodb","name":"OrthoDB","description":"OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups","pattern":"^\\w+$","uri_format":"http://cegg.unige.ch/orthodb/results?searchtext=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/orthodb:$1"}],"homepage":"https://www.orthodb.org","contact":{"name":"Evgeny M Zdobnov","orcid":"0000-0002-5178-1498","email":"evgeny.zdobnov@unige.ch"},"example":"Q9P0K8","example_extras":[],"provides":"uniprot","deprecated":false,"mappings":{"biocontext":"ORTHODB","miriam":"orthodb","n2t":"orthodb","prefixcommons":"orthodb","uniprot":"DB-0143"},"synonyms":[],"keywords":["dna","eukaryotic","phylogenomic databases","protein"],"publications":[{"pubmed":"39535043","doi":"10.1093/nar/gkae987"},{"pubmed":"30395283","doi":"10.1093/nar/gky1053","pmc":"PMC6323947","title":"OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs","year":2019},{"pubmed":"25428351","doi":"10.1093/nar/gku1220","pmc":"PMC4383991","title":"OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software","year":2014},{"pubmed":"20972218","doi":"10.1093/nar/gkq930","pmc":"PMC3013786","title":"OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011","year":2010}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"orthodb"}