appears_in: []
banana: MS
contact:
  email: joshua.adam.klein@gmail.com
  github: mobiusklein
  name: Joshua Klein
  orcid: 0000-0003-1279-6838
depends_on:
- pato
- uo
deprecated: false
description: The PSI-Mass Spectrometry (MS) CV contains all the terms used in the
  PSI MS-related data standards. The CV contains a logical hierarchical structure
  to ensure ease of maintenance and the development of software that makes use of
  complex semantics. The CV contains terms required for a complete description of
  an MS analysis pipeline used in proteomics, including sample labeling, digestion
  enzymes, instrumentation parts and parameters, software used for identification
  and quantification of peptides/proteins and the parameters and scores used to determine
  their significance.
download_obo: http://purl.obolibrary.org/obo/ms.obo
download_owl: http://purl.obolibrary.org/obo/ms.owl
example: '1000560'
example_extras: []
homepage: http://www.psidev.info/groups/controlled-vocabularies
keywords:
- chemistry
- dataplant
- nfdi4cat
- nfdi4chem
- obo
- ontology
license: CC-BY-3.0
mappings:
  aberowl: MS
  biocontext: MS
  bioportal: MS
  miriam: ms
  n2t: ms
  obofoundry: ms
  ols: ms
  ontobee: MS
  tib: ms
  wikidata.entity: Q81661714
name: Mass spectrometry ontology
namespace_in_lui: true
pattern: ^\d{7}$
preferred_prefix: MS
prefix: ms
providers: []
publications:
- doi: 10.1093/database/bat009
  pmc: PMC3594986
  pubmed: '23482073'
  title: The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
  year: 2013
rdf_uri_format: http://purl.obolibrary.org/obo/MS_$1
repository: https://github.com/HUPO-PSI/psi-ms-CV
synonyms: []
uri_format: http://purl.obolibrary.org/obo/MS_$1
version: 4.1.257
