{"prefix":"ms","name":"Mass spectrometry ontology","description":"The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.","pattern":"^\\d{7}$","uri_format":"http://purl.obolibrary.org/obo/MS_$1","rdf_uri_format":"http://purl.obolibrary.org/obo/MS_$1","providers":[],"homepage":"http://www.psidev.info/groups/controlled-vocabularies","repository":"https://github.com/HUPO-PSI/psi-ms-CV","contact":{"name":"Joshua Klein","orcid":"0000-0003-1279-6838","email":"joshua.adam.klein@gmail.com","github":"mobiusklein"},"example":"1000560","example_extras":[],"license":"CC-BY-3.0","version":"4.1.246","download_owl":"http://purl.obolibrary.org/obo/ms.owl","download_obo":"http://purl.obolibrary.org/obo/ms.obo","banana":"MS","deprecated":false,"mappings":{"aberowl":"MS","biocontext":"MS","bioportal":"MS","miriam":"ms","n2t":"ms","obofoundry":"ms","ols":"ms","ontobee":"MS","tib":"ms","wikidata.entity":"Q81661714"},"synonyms":[],"keywords":["chemistry","dataplant","nfdi4cat","nfdi4chem","obo","ontology"],"publications":[{"pubmed":"23482073","doi":"10.1093/database/bat009","pmc":"PMC3594986","title":"The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary","year":2013}],"appears_in":[],"depends_on":["pato","uo"],"namespace_in_lui":true,"preferred_prefix":"MS"}