{"prefix":"hssp","name":"Homology-derived Secondary Structures of Proteins Database","description":"HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.","pattern":"^\\w{4}$","uri_format":"ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2","providers":[{"code":"","name":"HSSP at CMBI","description":"HSSP at CMBI","homepage":"ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/","uri_format":"ftp://ftp.cmbi.ru.nl/pub/molbio/data/hssp/$1.hssp.bz2"},{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/hssp:$1"}],"homepage":"http://swift.cmbi.kun.nl/swift/hssp/","contact":{"name":"Chris Sander","orcid":"0000-0001-6059-6270","email":"chris@sanderlab.org","github":"sanderlab"},"example":"102l","example_extras":[],"deprecated":false,"mappings":{"biocontext":"HSSP","miriam":"hssp","n2t":"hssp","ncbi":"HSSP","prefixcommons":"hssp"},"synonyms":[],"keywords":["clustering","protein","sequence"],"publications":[{"pubmed":"8594579","doi":"10.1093/nar/24.1.201","pmc":"PMC145595","title":"The HSSP database of protein structure-sequence alignments","year":1996},{"pubmed":"7937066","pmc":"PMC308328","title":"The HSSP database of protein structure-sequence alignments","year":1994}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"hssp"}