{"prefix":"hogenom","name":"Database of Complete Genome Homologous Genes Families","description":"HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.","pattern":"^[A-Z][A-Z0-9_]+\\.PE\\d+$","uri_format":"http://hogenom.univ-lyon1.fr/query_sequence?Go=Submit+Query&seq=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/hogenom:$1"}],"homepage":"http://hogenom.univ-lyon1.fr/","contact":{"name":"Guy Perrière","orcid":"0000-0002-6850-6265","email":"perriere@biomserv.univ-lyon1.fr"},"owners":[{"ror":"03skt0t88","name":"Laboratoire de Biométrie et Biologie Evolutive, CNRS, Lyon"}],"example":"HOMO_3.PE998","example_extras":["AEDAE_SUPERCONT1_288.PE16","ATTCE_SCAFFOLD00004.PE150"],"deprecated":true,"mappings":{"biocontext":"HOGENOM","integbio":"nbdc01858","miriam":"hogenom","n2t":"hogenom","prefixcommons":"hogenom","uniprot":"DB-0044"},"synonyms":[],"keywords":["classification","genome/gene","phylogenomic databases","protein","sequence","taxonomy"],"publications":[{"pubmed":"19534752","doi":"10.1186/1471-2105-10-s6-s3","pmc":"PMC2697650","title":"Databases of homologous gene families for comparative genomics","year":2009},{"pubmed":"10720578","doi":"10.1101/gr.10.3.379","pmc":"PMC311423","title":"HOBACGEN: database system for comparative genomics in bacteria","year":2000}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"preferred_prefix":"hogenom"}