appears_in: []
contact:
  email: gabdank@stanford.edu
  name: Idan Gabdank
  orcid: 0000-0001-5025-5886
depends_on: []
deprecated: false
description: The ENCODE Consortium is integrating multiple technologies and approaches
  in a collective effort to discover and define the functional elements encoded in
  the human genome, including genes, transcripts, and transcriptional regulatory regions,
  together with their attendant chromatin states and DNA methylation patterns.
example: ENCSR163RYW
example_extras: []
homepage: https://www.encodeproject.org
keywords:
- epigenetics
- functional genomics
mappings:
  biocontext: ENCODE
  cellosaurus: ENCODE
  fairsharing: FAIRsharing.v0hbjs
  miriam: encode
  n2t: encode
  re3data: r3d100013051
name: Encyclopedia of DNA Elements
namespace_in_lui: false
pattern: ^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$
preferred_prefix: encode
prefix: encode
providers: []
publications:
- doi: 10.1038/s41586-020-2493-4
  pmc: PMC7410828
  pubmed: '32728249'
  title: Expanded encyclopaedias of DNA elements in the human and mouse genomes
  year: 2020
- doi: 10.1038/s41586-020-2449-8
  pmc: PMC7410827
  pubmed: '32728248'
  title: Perspectives on ENCODE
  year: 2020
- doi: 10.1002/cpbi.89
  pmc: PMC7307447
  pubmed: '31751002'
  title: The ENCODE Portal as an Epigenomics Resource
  year: 2019
- doi: 10.1093/nar/gkz1062
  pmc: PMC7061942
  pubmed: '31713622'
  title: New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
  year: 2020
- doi: 10.1093/nar/gkx1081
  pmc: PMC5753278
  pubmed: '29126249'
  title: 'The Encyclopedia of DNA elements (ENCODE): data portal update'
  year: 2018
- doi: 10.1371/journal.pone.0175310
  pmc: PMC5389787
  pubmed: '28403240'
  title: 'SnoVault and encodeD: A novel object-based storage system and applications
    to ENCODE metadata'
  year: 2017
- doi: 10.1093/database/baw001
  pmc: PMC4792520
  pubmed: '26980513'
  title: Principles of metadata organization at the ENCODE data coordination center
  year: 2016
- doi: 10.1093/nar/gkv1160
  pmc: PMC4702836
  pubmed: '26527727'
  title: ENCODE data at the ENCODE portal
  year: 2015
- doi: 10.1093/database/bav010
  pmc: PMC4360730
  pubmed: '25776021'
  title: Ontology application and use at the ENCODE DCC
  year: 2015
- doi: 10.1093/nar/gks1172
  pmc: PMC3531152
  pubmed: '23193274'
  title: 'ENCODE data in the UCSC Genome Browser: year 5 update'
  year: 2012
- doi: 10.1093/nar/gkr1012
  pmc: PMC3245183
  pubmed: '22075998'
  title: 'ENCODE whole-genome data in the UCSC Genome Browser: update 2012'
  year: 2011
- doi: 10.1093/nar/gkq1017
  pmc: PMC3013645
  pubmed: '21037257'
  title: ENCODE whole-genome data in the UCSC genome browser (2011 update)
  year: 2010
- doi: 10.1093/nar/gkp961
  pmc: PMC2808953
  pubmed: '19920125'
  title: ENCODE whole-genome data in the UCSC Genome Browser
  year: 2009
- doi: 10.1093/nar/gkl1017
  pmc: PMC1781110
  pubmed: '17166863'
  title: The ENCODE Project at UC Santa Cruz
  year: 2006
- doi: 10.1126/science.1105136
  pubmed: '15499007'
  title: The ENCODE (ENCyclopedia Of DNA Elements) Project
  year: 2004
synonyms: []
uri_format: https://www.encodeproject.org/$1
