appears_in: []
contact:
  email: pkarp@ai.sri.com
  github: pkarp111
  name: Peter D. Karp
  orcid: 0000-0002-5876-6418
contributor_extras:
- email: cjmungall@lbl.gov
  github: cmungall
  name: Chris Mungall
  orcid: 0000-0002-6601-2165
depends_on: []
deprecated: false
description: EcoCyc is a scientific database for the bacterium Escherichia coli K-12
  MG1655. The EcoCyc project performs literature-based curation of its genome, and
  of transcriptional regulation, transporters, and metabolic pathways.
example: AICARTRANSIMPCYCLO-CPLX
example_extras: []
homepage: https://ecocyc.org/
keywords:
- biopax
- genome/gene
- interaction/pathway
- metabolite
- protein
- rna
- sbml
- sequence
mappings:
  go: EcoCyc
  integbio: nbdc00262
  ncbi: ECOCYC
  pathguide: '9'
  re3data: r3d100011277
name: EcoCyc
namespace_in_lui: false
preferred_prefix: ecocyc
prefix: ecocyc
providers: []
publications:
- doi: 10.1128/ecosalplus.esp-0019-2024
  pubmed: '40304522'
  title: The EcoCyc database (2025)
  year: 2025
- doi: 10.3389/fmicb.2021.711077
  pmc: PMC8357350
  pubmed: '34394059'
  title: The EcoCyc Database in 2021
  year: 2021
- doi: 10.1093/nar/gkw1003
  pmc: PMC5210515
  pubmed: '27899573'
  title: 'The EcoCyc database: reflecting new knowledge about Escherichia coli K-12'
  year: 2016
- doi: 10.1128/ecosalplus.esp-0009-2013
  pmc: PMC4243172
  pubmed: '26442933'
  title: The EcoCyc Database
  year: 2014
- doi: 10.1093/nar/gks1027
  pmc: PMC3531154
  pubmed: '23143106'
  title: 'EcoCyc: fusing model organism databases with systems biology'
  year: 2012
synonyms: []
uri_format: https://ecocyc.org/gene?id=$1
