{"prefix":"ecocyc","name":"EcoCyc","description":"EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.","uri_format":"https://ecocyc.org/gene?id=$1","providers":[],"homepage":"https://ecocyc.org/","contact":{"name":"Peter D. Karp","orcid":"0000-0002-5876-6418","email":"pkarp@ai.sri.com","github":"pkarp111"},"example":"AICARTRANSIMPCYCLO-CPLX","example_extras":[],"deprecated":false,"mappings":{"go":"EcoCyc","integbio":"nbdc00262","ncbi":"ECOCYC","pathguide":"9","re3data":"r3d100011277"},"synonyms":[],"keywords":["biopax","genome/gene","interaction/pathway","metabolite","protein","rna","sbml","sequence"],"publications":[{"pubmed":"40304522","doi":"10.1128/ecosalplus.esp-0019-2024","title":"The EcoCyc database (2025)","year":2025},{"pubmed":"34394059","doi":"10.3389/fmicb.2021.711077","pmc":"PMC8357350","title":"The EcoCyc Database in 2021","year":2021},{"pubmed":"27899573","doi":"10.1093/nar/gkw1003","pmc":"PMC5210515","title":"The EcoCyc database: reflecting new knowledge about Escherichia coli K-12","year":2016},{"pubmed":"26442933","doi":"10.1128/ecosalplus.esp-0009-2013","pmc":"PMC4243172","title":"The EcoCyc Database","year":2014},{"pubmed":"23143106","doi":"10.1093/nar/gks1027","pmc":"PMC3531154","title":"EcoCyc: fusing model organism databases with systems biology","year":2012},{"pubmed":"21097882"}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Chris Mungall","orcid":"0000-0002-6601-2165","email":"cjmungall@lbl.gov","github":"cmungall"}],"preferred_prefix":"ecocyc"}