{"prefix":"arrayexpress","name":"ArrayExpress","description":"ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.","pattern":"^[AEP]-\\w{4}-\\d+$","uri_format":"https://www.ebi.ac.uk/arrayexpress/experiments/$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/arrayexpress:$1"},{"code":"omicsdi","name":"ArrayExpress through OmicsDI","description":"ArrayExpress through OmicsDI","homepage":"https://www.omicsdi.org/","uri_format":"https://www.omicsdi.org/dataset/arrayexpress-repository/$1"}],"homepage":"https://www.ebi.ac.uk/arrayexpress/","contact":{"name":"Alvis Brazma","orcid":"0000-0001-5988-7409","email":"brazma@ebi.ac.uk"},"owners":[{"ror":"02catss52","name":"European Bioinformatics Institute"}],"example":"E-MEXP-1712","example_extras":[],"license":"http://www.ebi.ac.uk/Information/termsofuse.html","deprecated":false,"mappings":{"biocontext":"ARRAYEXPRESS","cellosaurus":"ArrayExpress","integbio":"nbdc00009","miriam":"arrayexpress","n2t":"arrayexpress","prefixcommons":"arrayexpress","re3data":"r3d100010222","wikidata.entity":"Q106638376"},"synonyms":[],"keywords":["cdna/est","expression","genome/gene","microarray","nucleotide","protein","repository","rna"],"references":["https://github.com/biopragmatics/bioregistry/pull/1141"],"publications":[{"pubmed":"30357387","doi":"10.1093/nar/gky964","pmc":"PMC6323929","title":"ArrayExpress update - from bulk to single-cell expression data","year":2019},{"pubmed":"25361974","doi":"10.1093/nar/gku1057","pmc":"PMC4383899","title":"ArrayExpress update--simplifying data submissions","year":2014},{"pubmed":"21071405"},{"pubmed":"19015125"},{"pubmed":"17132828"},{"pubmed":"16939801"},{"pubmed":"15608260"},{"pubmed":"14744115"},{"pubmed":"12519949","doi":"10.1093/nar/gkg091","pmc":"PMC165538","title":"ArrayExpress--a public repository for microarray gene expression data at the EBI","year":2003}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Sumir H Pandit","orcid":"0000-0002-1216-4761","email":"sumirp77@gmail.com","github":"sumirp"}],"preferred_prefix":"arrayexpress"}