{"prefix":"amoebadb","name":"AmoebaDB","description":"AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.","pattern":"^EDI_\\d+$","uri_format":"https://amoebadb.org/amoeba/app/record/gene/$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/amoebadb:$1"}],"homepage":"http://amoebadb.org/amoeba/","contact":{"name":"Omar S. Harb","orcid":"0000-0003-4446-6200","email":"oharb@upenn.edu","github":"ramobrah"},"example":"EDI_244000","example_extras":[],"deprecated":false,"mappings":{"biocontext":"AMOEBADB","integbio":"nbdc01207","miriam":"amoebadb","n2t":"amoebadb","prefixcommons":"amoebadb","re3data":"r3d100012457","wikidata.entity":"Q4747456"},"synonyms":[],"keywords":["cdna/est","expression","genetic variation","genome/gene","model organism","protein","repository","sequence"],"references":["https://github.com/biopragmatics/bioregistry/pull/1098"],"publications":[{"pubmed":"20974635"},{"pubmed":"19914931","doi":"10.1093/nar/gkp941","pmc":"PMC2808945","title":"EuPathDB: a portal to eukaryotic pathogen databases","year":2009}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"contributor_extras":[{"name":"Sumir H Pandit","orcid":"0000-0002-1216-4761","email":"sumirp77@gmail.com","github":"sumirp"}],"preferred_prefix":"amoebadb"}