aberowl:
  availability:
    alternate_providers: missing
    contact: missing
    description: required
    example: present
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: present
  bibtex: Hoehndorf2015
  contact:
    email: maxat.kulmanov@kaust.edu.sa
    github: coolmaksat
    name: Maxat Kulmanov
    orcid: 0000-0003-1710-1820
  description: AberOWL is a framework for ontology-based access to biological data.
    It consists of a repository of bio-ontologies, a set of webservices which provide
    access to OWL(-EL) reasoning over the ontologies, and several frontends which
    utilise the ontology repository and reasoning services to provide access to specific
    biological datasets.
  download: http://aber-owl.net/api/ontology/?format=json
  example: CHEBI
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: false
    curation: import
    data_repository: null
    imports: true
    issue_tracker: https://github.com/bio-ontology-research-group/aberowlweb/issues
    public_version_controlled_data: false
    review_team: n/a
    scope: bio-ontologies
    status: active
  homepage: http://aber-owl.net
  license: See https://github.com/biopragmatics/bioregistry/issues/339
  logo_url: http://aber-owl.net/static/images/logo-owl-small.33629e604a66.png
  name: AberOWL
  prefix: aberowl
  provider_uri_format: http://aber-owl.net/ontology/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  resolver_uri_format: http://aber-owl.net/ontology/$1/#/Browse/<http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F$1_$2>
  search_uri_format: http://aber-owl.net/#/$1/Ontologies
agroportal:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: present
    homepage: required
    license: present
    name: required
    pattern: missing
    provider: required
    search: true
    synonyms: missing
    version: present
  bibtex: Jonquet2018
  contact:
    email: clement.jonquet@inrae.fr
    github: jonquet
    name: Clement Jonquet
    orcid: 0000-0002-2404-1582
  description: A vocabulary and ontology repository for agronomy and related domains.
  example: ENVO
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: https://github.com/agroportal/project-management/issues
    public_version_controlled_data: false
    review_team: private
    scope: agro-ontologies
    status: active
  homepage: http://agroportal.lirmm.fr
  license: See https://github.com/biopragmatics/bioregistry/issues/336
  logo_url: https://avatars.githubusercontent.com/u/16088111
  name: AgroPortal
  prefix: agroportal
  provider_uri_format: http://agroportal.lirmm.fr/ontologies/$1
  qualities:
    automatable_download: true
    bulk_data: false
    no_authentication: false
    structured_data: true
  resolver_type: lookup
bartoc:
  availability:
    alternate_providers: present
    contact: present
    description: present
    example: missing
    homepage: present
    license: present
    name: required
    pattern: present
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bioregistry_prefix: bartoc
  contact:
    email: andreas.ledl1@fhnw.ch
    github: nichtich
    name: Andreas Ledl
    orcid: 0000-0002-0629-0446
  description: 'The Basic Register of Thesauri, Ontologies & Classifications (BARTOC)
    is a database of Knowledge Organization Systems and KOS related registries.\nThe
    main goal of BARTOC is to list as many Knowledge Organization Systems as possible
    at one place in order to achieve greater visibility, highlight their features,
    make them searchable and comparable, and foster knowledge sharing. BARTOC includes
    any kind of KOS from any subject area, in any language, any publication format,
    and any form of accessibility. BARTOC’s search interface is available in 20 European
    languages and provides two search options: Basic Search by keywords, and Advanced
    Search by taxonomy terms. A circle of editors has gathered around BARTOC from
    all across Europe and BARTOC has been approved by the International Society for
    Knowledge Organization (ISKO).'
  download: https://bartoc.org/data/dumps/latest.ndjson
  example: '181'
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/gbv/bartoc.org
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: https://github.com/gbv/bartoc.org/issues
    public_version_controlled_data: false
    review_team: public
    scope: general
    status: active
  homepage: https://bartoc.org/
  license: PDDL 1.0
  logo_url: https://bartoc.org/img/bartoc-logo.svg
  name: Basic Register of Thesauri, Ontologies & Classifications
  prefix: bartoc
  provider_uri_format: https://bartoc.org/en/node/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: BARTOC
biocontext:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: missing
    name: missing
    pattern: missing
    provider: present
    search: false
    synonyms: missing
    version: missing
  bibtex: biocontext
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    name: Chris Mungall
    orcid: 0000-0002-6601-2165
  description: BioContext contains modular JSON-LD contexts for bioinformatics data.
  download: https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld
  example: CHEBI
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/prefixcommons/biocontext
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/prefixcommons/biocontext
    imports: false
    issue_tracker: https://github.com/prefixcommons/biocontext/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: internal
    status: active
  homepage: https://github.com/prefixcommons/biocontext
  license: missing
  name: BioContext
  prefix: biocontext
  provider_uri_format: https://bioregistry.io/metaregistry/biocontext/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
biolink:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: present
    name: required
    pattern: missing
    provider: required
    search: false
    synonyms: missing
    version: missing
  bibtex: Unni2022
  bioregistry_prefix: biolink
  contact:
    email: deepak.unni3@lbl.gov
    github: deepakunni3
    name: Deepak Unni
    orcid: 0000-0002-3583-7340
  description: A modeling paradigm-specific registry of prefixes and their URL expansions
  download: https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml
  example: doi
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/biolink/biolink-model
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/biolink/biolink-model
    imports: false
    issue_tracker: https://github.com/biolink/biolink-model/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: internal
    status: active
  homepage: https://github.com/biolink/biolink-model
  license: Apache 2.0
  logo_url: https://avatars.githubusercontent.com/u/25489141
  name: Biolink Model Registry
  prefix: biolink
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: Biolink
bioportal:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: present
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: required
    search: true
    synonyms: missing
    version: required
  bibtex: Whetzel2011
  bioregistry_prefix: bioportal
  contact:
    email: jgraybeal@stanford.edu
    github: graybeal
    name: John Graybeal
    orcid: 0000-0001-6875-5360
  description: The BioPortal is a less stringent registry of biomedical ontologies
    than the OBO Foundry
  example: CHEBI
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: https://github.com/ncbo/bioportal-project/issues
    public_version_controlled_data: false
    review_team: private
    scope: bio-ontologies
    status: active
  homepage: https://bioportal.bioontology.org/
  license: See https://github.com/biopragmatics/bioregistry/issues/337
  logo_url: https://ontoportal.org/images/alliance_member_logos/bioportal.png
  name: BioPortal Prefixes
  prefix: bioportal
  provider_uri_format: https://bioportal.bioontology.org/ontologies/$1
  qualities:
    automatable_download: true
    bulk_data: false
    no_authentication: false
    structured_data: true
  resolver_type: lookup
  short_name: BioPortal
bioregistry:
  availability:
    alternate_providers: present
    contact: present
    description: required
    example: required
    homepage: required
    license: present
    name: required
    pattern: present
    provider: present
    search: true
    synonyms: present
    version: present
  bibtex: Hoyt2022
  bioregistry_prefix: bioregistry
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    name: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: The Bioregistry is integrative meta-registry of biological databases,
    ontologies, and nomenclatures that is backed by an open database.
  download: https://bioregistry.io/api/registry/
  example: chebi
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/biopragmatics/bioregistry
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/biopragmatics/bioregistry
    imports: true
    issue_tracker: https://github.com/biopragmatics/bioregistry/issues
    public_version_controlled_data: true
    review_team: public
    scope: life sciences
    status: active
  homepage: https://bioregistry.io
  license: CC0
  logo_url: https://bioregistry.io/static/logo.svg
  name: Bioregistry
  prefix: bioregistry
  provider_uri_format: https://bioregistry.io/registry/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: resolver
  resolver_uri_format: https://bioregistry.io/$1:$2
cellosaurus:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: required
    search: false
    synonyms: missing
    version: missing
  bibtex: Bairoch2018
  bioregistry_prefix: cellosaurus.resource
  contact:
    email: Amos.Bairoch@sib.swiss
    github: AmosBairoch
    name: Amos Bairoch
    orcid: 0000-0003-2826-6444
  description: The set of prefixes used in the Cellosaurus resource
  example: 4DN
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: true
    curation: private
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: internal
    status: active
  homepage: https://web.expasy.org/cellosaurus/
  license: CC BY 4.0
  logo_url: https://www.cellosaurus.org/images/cellosaurus/cellosaurus.png
  name: Cellosaurus Registry
  prefix: cellosaurus
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: Cellosaurus
cheminf:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: false
    synonyms: missing
    version: missing
  bibtex: Hastings2011
  bioregistry_prefix: cheminf
  contact:
    email: egon.willighagen@gmail.com
    github: egonw
    name: Egon Willighagen
    orcid: 0000-0001-7542-0286
  description: Contains entries for various database identifiers
  example: '000140'
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/semanticchemistry/semanticchemistry
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/semanticchemistry/semanticchemistry
    imports: false
    issue_tracker: https://github.com/semanticchemistry/semanticchemistry/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: chemistry
    status: unresponsive
  homepage: https://github.com/semanticchemistry/semanticchemistry
  license: CC BY 3.0
  name: Chemical Information Ontology
  prefix: cheminf
  provider_uri_format: https://semanticscience.org/resource/CHEMINF_$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  short_name: CHEMINF
cropoct:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: present
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: required
    search: true
    synonyms: missing
    version: missing
  bibtex: Arnaud2020
  contact:
    email: e.arnaud@cgiar.org
    github: elizabetharnaud
    name: Elizabeth Arnaud
    orcid: 0000-0002-6020-5919
  description: The Crop Ontology (CO) current objective is to compile validated concepts
    along with their inter-relationships on anatomy, structure and phenotype of Crops,
    on trait measurement and methods as well as on Germplasm with the multi-crop passport
    terms
  download: https://cropontology.org/metadata
  example: CO_325
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: https://github.com/EBISPOT/OLS/issues
    public_version_controlled_data: false
    review_team: public
    scope: agro-ontologies
    status: active
  homepage: https://www.cropontology.org
  license: CC BY 4.0
  logo_url: https://cropontology.org/cropontology_static/crop_ontology_logo_2.png
  name: Crop Ontology Curation Tool
  prefix: cropoct
  provider_uri_format: https://cropontology.org/ontology/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  resolver_uri_format: https://cropontology.org/term/$1:$2
  short_name: CropOCT
ecoportal:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: present
    homepage: present
    license: present
    name: required
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: present
  bibtex: Kechagioglou2021
  contact:
    email: xeni.kechagioglou@lifewatch.eu
    github: xeniacs
    name: Xeni Kechagioglou
    orcid: 0000-0003-4494-839X
  description: The LifeWatch ERIC repository of semantic resources for the ecological
    domain.
  example: AGROVOC
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: private
    scope: eco-ontologies
    status: active
  homepage: http://ecoportal.lifewatch.eu
  license: See https://github.com/biopragmatics/bioregistry/issues/338
  logo_url: https://metadatacatalogue.lifewatch.eu/srv/api/records/95a44a9c-6f70-454f-9d3e-5e9d5684bb51/attachments/EcoPortal%20Positivo2.png
  name: EcoPortal
  prefix: ecoportal
  provider_uri_format: http://ecoportal.lifewatch.eu/ontologies/$1
  qualities:
    automatable_download: true
    bulk_data: false
    no_authentication: false
    structured_data: true
  resolver_type: lookup
edam:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bibtex: Ison2013
  bioregistry_prefix: edam.data
  contact:
    email: matus.kalas@uib.no
    github: matuskalas
    name: Matúš Kalaš
    orcid: 0000-0002-1509-4981
  description: EDAM is a comprehensive ontology of well-established, familiar concepts
    that are prevalent within computational biology, bioinformatics, and bioimage
    informatics. EDAM includes types of data and data identifiers, data formats, operations,
    and topics related to data analysis in life sciences. EDAM provides a set of concepts
    with preferred terms and synonyms, related terms, definitions, and other information
    - organised into a simple and intuitive hierarchy for convenient use.
  download: http://edamontology.org/EDAM.owl
  example: '1004'
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/edamontology/edamontology
    comments: null
    curates: true
    curation: community
    data_repository: https://github.com/edamontology/edamontology
    imports: false
    issue_tracker: https://github.com/edamontology/edamontology/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: Life Sciences
    status: active
  homepage: ' http://edamontology.org'
  license: CC BY-SA 4.0
  logo_url: https://avatars.githubusercontent.com/u/7922809
  name: EDAM Ontology
  prefix: edam
  provider_uri_format: http://edamontology.org/data_$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: EDAM
fairsharing:
  availability:
    alternate_providers: missing
    contact: required
    description: required
    example: missing
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bibtex: Sansone2019
  bioregistry_prefix: fairsharing
  contact:
    email: allyson.lister@oerc.ox.ac.uk
    github: allysonlister
    name: Allyson Lister
    orcid: 0000-0002-7702-4495
  description: A curated, informative and educational resource on data and metadata
    standards, inter-related to databases and data policies.
  example: FAIRsharing.62qk8w
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: private
    scope: life sciences
    status: active
  homepage: https://fairsharing.org/
  license: CC BY-SA 4.0
  logo_url: https://api.fairsharing.org/img/fairsharing-attribution.svg
  name: FAIRSharing
  prefix: fairsharing
  provider_uri_format: https://fairsharing.org/$1
  qualities:
    automatable_download: true
    bulk_data: false
    no_authentication: false
    structured_data: true
go:
  availability:
    alternate_providers: present
    contact: missing
    description: present
    example: present
    homepage: present
    license: missing
    name: required
    pattern: present
    provider: present
    search: false
    synonyms: missing
    version: missing
  bibtex: TheGeneOntologyConsortium2019
  bioregistry_prefix: go.resource
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    name: Chris Mungall
    orcid: 0000-0002-6601-2165
  description: A database-specific registry supporting curation in the Gene Ontology
  download: https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml
  example: CHEBI
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/geneontology/go-site
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/geneontology/go-site
    imports: false
    issue_tracker: https://github.com/geneontology/go-site/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: internal
    status: inactive
  homepage: http://geneontology.org/
  license: CC BY 4.0
  logo_url: http://geneontology.org/assets/go-logo.large.png
  name: Gene Ontology Registry
  prefix: go
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: GO
hl7:
  availability:
    alternate_providers: missing
    contact: present
    description: present
    example: missing
    homepage: present
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: false
    synonyms: missing
    version: missing
  bibtex: Bender2013
  bioregistry_prefix: oid
  contact:
    email: hq@HL7.org
    github: null
    name: HL7 Support
    orcid: null
  description: HL7 External Code Systems are stored within the greater OID system
  example: 2.16.840.1.113883.6.88
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: general
    status: active
  homepage: http://www.oid-info.com/get/2.16.840.1.113883.6
  license: See https://github.com/biopragmatics/bioregistry/issues/586
  logo_url: https://comjoodoc.de/wp-content/uploads/2019/03/blog_comjoodoc_hl7fhir-1200x800.png
  name: HL7 External Code Systems
  prefix: hl7
  provider_uri_format: https://oid-base.com/get/$1
  qualities:
    automatable_download: false
    bulk_data: false
    no_authentication: true
    structured_data: true
  short_name: HL7
integbio:
  availability:
    alternate_providers: missing
    contact: missing
    description: required
    example: missing
    homepage: present
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: false
    synonyms: missing
    version: missing
  bioregistry_prefix: integbio
  contact:
    email: kwsm@dbcls.rois.ac.jp
    github: skwsm
    name: Shuichi Kawashima
    orcid: 0000-0001-7883-3756
  description: 'Integbio Database Catalog provides whereabouts information (URL),
    database description, biological species and other attributes (metadata) of Japanese
    and international life science databases to make it easier for users to find databases
    they need. This catalog has been developed as a part of the integration of life
    science databases promoted by four ministries in Japan: the Ministry of Education,
    Culture, Sports, Science, and Technology (MEXT), The Ministry of Health, Labor,
    and Welfare (MHLW), the Ministry of Agriculture, Forestry, and Fisheries (MAFF),
    and the Ministry of Economy, Trade, and Industry of Japan (METI). (from https://integbio.jp/dbcatalog/en/about)'
  download: https://integbio.jp/dbcatalog/files/zip/en_integbio_dbcatalog_cc0_20240112_utf8.csv.zip
  example: nbdc01071
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: false
    curation: import
    data_repository: null
    imports: true
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: bio-ontologies
    status: active
  homepage: https://integbio.jp/en/
  license: CC0
  logo_url: https://integbio.jp/templates/integbio/images/logo/logo.png
  name: Integbio
  prefix: integbio
  provider_uri_format: https://catalog.integbio.jp/dbcatalog/en/record/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  search_uri_format: https://integbio.jp/dbcatalog/dbsearch-en?cck=database_catalog&order_en=1&dbcat_search_all_en=$1&tag2_en=&tag3_en=&inst_country_en=&inst_country_others_en=&dbarchive_en=&togotv_en=&data_downloadable_en=&biosharing_en=&record_creation_en=&status_en=&dbcat_ministry=&taxonomy=&lang=en&search=database_catalog_search_en&task=search
lov:
  availability:
    alternate_providers: missing
    contact: missing
    description: present
    example: missing
    homepage: present
    license: missing
    name: required
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: missing
  contact:
    email: py.vandenbussche@gmail.com
    github: pyvandenbussche
    name: Pierre-Yves Vandenbussche
    orcid: 0000-0003-0591-6109
  description: A vocabulary in LOV gathers definitions of a set of classes and properties
    (together simply called terms of the vocabulary), useful to describe specific
    types of things, or things in a given domain or industry, or things at large but
    for a specific usage. Terms of vocabularies also provide the links in linked data,
    in the above case between a Person and a City. The definitions of terms provided
    by the vocabularies bring clear semantics to descriptions and links, thanks to
    the formal language they use (some dialect of RDF such as RDFS or OWL). In short,
    vocabularies provide the semantic glue enabling Data to become meaningful Data.
    [from https://lov.linkeddata.es/dataset/lov/about]
  download: https://lov.linkeddata.es/lov.n3.gz
  example: m4i
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/pyvandenbussche/lov
    comments: null
    curates: true
    curation: import
    data_repository: null
    imports: true
    issue_tracker: https://github.com/pyvandenbussche/lov/issues
    public_version_controlled_data: false
    review_team: n/a
    scope: semantic web
    status: active
  homepage: https://lov.linkeddata.es
  license: CC BY 4.0
  logo_url: https://lov.linkeddata.es/img/icon-LOV.png
  name: Linked Open Vocabularies
  prefix: lov
  provider_uri_format: https://lov.linkeddata.es/dataset/lov/vocabs/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  search_uri_format: https://lov.linkeddata.es/dataset/lov/vocabs?q=$1
  short_name: LOV
miriam:
  availability:
    alternate_providers: present
    contact: missing
    description: required
    example: required
    homepage: required
    license: missing
    name: required
    pattern: required
    provider: required
    search: true
    synonyms: missing
    version: missing
  bibtex: Juty2012
  bioregistry_prefix: miriam
  contact:
    email: hhe@ebi.ac.uk
    github: hHermjakob
    name: Henning Hermjakob
    orcid: 0000-0001-8479-0262
  description: The Identifiers.org Resolution Service provides consistent access to
    life science data using Compact Identifiers. Compact Identifiers consist of an
    assigned unique prefix and a local provider designated accession number (prefix:accession).
  download: https://registry.api.identifiers.org/resolutionApi/getResolverDataset
  example: chebi
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/identifiers-org/cloud-satellite-web-spa
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: https://github.com/identifiers-org/identifiers-org.github.io/issues
    public_version_controlled_data: false
    review_team: private
    scope: life sciences
    status: unresponsive
  homepage: https://identifiers.org
  license: CC BY 4.0
  logo_url: https://identifiers.org/identifiers_logo.f6737b08.png
  name: Identifiers.org
  prefix: miriam
  provider_uri_format: https://registry.identifiers.org/registry/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: resolver
  resolver_uri_format: https://identifiers.org/$1:$2
n2t:
  availability:
    alternate_providers: present
    contact: missing
    description: required
    example: required
    homepage: required
    license: missing
    name: required
    pattern: required
    provider: required
    search: false
    synonyms: present
    version: missing
  bibtex: Wimalaratne2018
  bioregistry_prefix: n2t
  contact:
    email: jak@ucop.edu
    github: jkunze
    name: John Kunze
    orcid: 0000-0001-7604-8041
  description: An ARK resolver as well as resolver built with common prefixes as in
    Identifiers.org
  download: https://n2t.net/e/n2t_full_prefixes.yaml
  example: chebi
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: false
    curation: import
    data_repository: null
    imports: true
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: life sciences
    status: active
  homepage: https://n2t.net
  license: CC0
  logo_url: https://n2t.net/e/images/n2t_net_logo.png
  name: Name-to-Thing
  prefix: n2t
  provider_uri_format: 'https://n2t.net/$1:'
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: resolver
  resolver_uri_format: https://n2t.net/$1:$2
  short_name: N2T
ncbi:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: required
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: false
    synonyms: missing
    version: missing
  bibtex: Clark2016
  bioregistry_prefix: ncbi.resource
  contact:
    email: gb-admin@ncbi.nlm.nih.gov
    github: null
    name: GenBank Support
    orcid: null
  description: A database-specific registry supporting curation in the NCBI GenBank
    and related NCBI resources
  example: ECOCYC
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: true
    curation: private
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: internal
    status: inactive
  homepage: https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/
  license: See https://github.com/biopragmatics/bioregistry/issues/342
  logo_url: https://upload.wikimedia.org/wikipedia/commons/0/07/US-NLM-NCBI-Logo.svg
  name: National Center for Biotechnology Information Registry
  prefix: ncbi
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: false
  short_name: NCBI
obofoundry:
  availability:
    alternate_providers: missing
    contact: required
    description: required
    example: missing
    homepage: required
    license: required
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bibtex: Jackson2021
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    name: Chris Mungall
    orcid: 0000-0002-6601-2165
  description: The mission of the OBO Foundry is to develop a family of interoperable
    ontologies that are both logically well-formed and scientifically accurate.
  download: http://www.obofoundry.org/registry/ontologies.yml
  example: CHEBI
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/OBOFoundry/OBOFoundry.github.io
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/OBOFoundry/OBOFoundry.github.io
    imports: false
    issue_tracker: https://github.com/OBOFoundry/OBOFoundry.github.io/issues
    public_version_controlled_data: true
    review_team: public
    scope: bio-ontologies
    status: active
  homepage: http://www.obofoundry.org/
  license: CC0
  logo_url: https://obofoundry.org/images/foundrylogo.png
  name: OBO Foundry
  prefix: obofoundry
  provider_uri_format: https://www.obofoundry.org/ontology/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: resolver
  resolver_uri_format: http://purl.obolibrary.org/obo/$1_$2
ols:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: present
    homepage: present
    license: required
    name: required
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: present
  bibtex: Cote2006a
  contact:
    email: henriette007@ebi.ac.uk
    github: henrietteharmse
    name: Henriette Harmse
    orcid: 0000-0001-7251-9504
  description: 'The Ontology Lookup Service (OLS) is a repository for biomedical ontologies
    that aims to provide a single point of access to the latest ontology versions. '
  example: chebi
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/EBISPOT/ols4
    comments: Accepts suggestions through the OLS issue tracker at https://github.com/EBISPOT/ols4/issues
    curates: false
    curation: import
    data_repository: https://github.com/EBISPOT/OLS
    imports: true
    issue_tracker: https://github.com/EBISPOT/ols4/issues/
    public_version_controlled_data: true
    review_team: inferrable
    scope: bio-ontologies
    status: active
  homepage: https://www.ebi.ac.uk/ols4
  license: See https://github.com/biopragmatics/bioregistry/issues/340
  logo_url: https://www.ebi.ac.uk/ols4/logo.png
  name: EBI Ontology Lookup Service
  prefix: ols
  provider_uri_format: https://www.ebi.ac.uk/ols4/ontologies/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  short_name: OLS
ontobee:
  availability:
    alternate_providers: missing
    contact: required
    description: required
    example: present
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: present
    search: false
    synonyms: missing
    version: missing
  bibtex: Ong2017
  contact:
    email: yongqunh@med.umich.edu
    github: yongqunh
    name: Yongqun Oliver He
    orcid: 0000-0001-9189-9661
  description: Ontobee is aimed to facilitate ontology data sharing, visualization,
    query, integration, and analysis.
  example: AGRO
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: false
    curation: import
    data_repository: null
    imports: true
    issue_tracker: https://github.com/OntoZoo/ontobee/issues
    public_version_controlled_data: false
    review_team: n/a
    scope: bio-ontologies
    status: active
  homepage: http://www.ontobee.org/
  license: See https://github.com/biopragmatics/bioregistry/issues/341
  logo_url: https://ontobee.org/public/images/logo.gif
  name: OntoBee
  prefix: ontobee
  provider_uri_format: http://www.ontobee.org/ontology/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: false
  resolver_type: lookup
  resolver_uri_format: http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2
pathguide:
  availability:
    alternate_providers: missing
    contact: missing
    description: present
    example: missing
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bioregistry_prefix: pathguide
  contact:
    email: gary.bader@utoronto.ca
    github: gbader
    name: Gary Bader
    orcid: 0000-0003-0185-8861
  description: Pathguide contains information about 702 biological pathway related
    resources and molecular interaction related resources. Click on a link to go to
    the resource home page or 'Details' for a description page. Databases that are
    free and those supporting BioPAX, CellML, PSI-MI or SBML standards are respectively
    indicated. (from homepage)
  example: '235'
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: bio-ontologies
    status: active
  homepage: http://pathguide.org
  license: Unknown
  logo_url: http://pathguide.org/images/logo.gif
  name: Pathguide
  prefix: pathguide
  provider_uri_format: http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1
  qualities:
    automatable_download: false
    bulk_data: false
    no_authentication: true
    structured_data: false
prefixcc:
  availability:
    alternate_providers: present
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: missing
    name: missing
    pattern: missing
    provider: required
    search: false
    synonyms: missing
    version: missing
  contact:
    email: richard@cyganiak.de
    github: cygri
    name: Richard Cyganiak
    orcid: 0000-0001-9950-5209
  description: A web-developer centric archive of prefixes and URI prefixes
  download: https://prefix.cc/context.jsonld
  example: foaf
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/cygri/prefix.cc/
    comments: null
    curates: true
    curation: community
    data_repository: null
    imports: false
    issue_tracker: https://github.com/cygri/prefix.cc/issues
    public_version_controlled_data: false
    review_team: democratic
    scope: general
    status: active
  homepage: https://prefix.cc/
  license: CC0
  name: Prefix.cc
  prefix: prefixcc
  provider_uri_format: https://prefix.cc/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
prefixcommons:
  availability:
    alternate_providers: present
    contact: missing
    description: present
    example: present
    homepage: present
    license: missing
    name: required
    pattern: present
    provider: present
    search: true
    synonyms: present
    version: missing
  bibtex: prefixcommons
  bioregistry_prefix: prefixcommons
  contact:
    email: michel.dumontier@gmail.com
    github: micheldumontier
    name: Michel Dumontier
    orcid: 0000-0003-4727-9435
  description: A registry of commonly used prefixes in the life sciences and linked
    data. The source data for this registry is a spreadsheet on Google called the
    Life Science Registry. This registry was previously known as Prefix Commons and
    was available at https://prefixcommons.org.
  download: http://tinyurl.com/lsregistry
  example: doi
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: community
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: public
    scope: life sciences
    status: active
  homepage: https://registry.bio2kg.org
  license: CC0
  logo_url: https://avatars.githubusercontent.com/u/15466415
  name: Prefix Commons
  prefix: prefixcommons
  provider_uri_format: https://registry.bio2kg.org/resource/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
re3data:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: missing
    homepage: required
    license: present
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: missing
    version: missing
  bibtex: Pampel2013
  bioregistry_prefix: re3data
  contact:
    email: mwitt@purdue.edu
    github: mwittin
    name: Michael Witt
    orcid: 0000-0003-4221-7956
  description: Re3data is a global registry of research data repositories that covers
    research data repositories from different academic disciplines.
  example: r3d100014165
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: private
    scope: general
    status: active
  homepage: https://www.re3data.org
  license: CC0
  logo_url: https://www.re3data.org/bundles/kitlibraryre3dataapp/img/re3datalogo_black.png
  name: Registry of Research Data Repositories
  prefix: re3data
  provider_uri_format: https://www.re3data.org/repository/$1
  qualities:
    automatable_download: true
    bulk_data: false
    no_authentication: true
    structured_data: false
  short_name: re3data
rrid:
  availability:
    alternate_providers: missing
    contact: present
    description: missing
    example: missing
    homepage: required
    license: present
    name: required
    pattern: missing
    provider: missing
    search: true
    synonyms: present
    version: missing
  bioregistry_prefix: rrid
  contact:
    email: bandrow@gmail.com
    github: bandrow
    name: Anita Bandrowski
    orcid: 0000-0002-5497-0243
  description: 'The Research Resource Identification Initiative provides RRIDs to
    4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases
    / Software tools'
  download: https://docs.google.com/spreadsheets/d/1BEPZXZsENhK7592AR83xUwbPbR2J-GVQ/edit?usp=sharing&ouid=107737386203376389514&rtpof=true&sd=true
  example: AB
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: opaque-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: private
    scope: life sciences
    status: active
  homepage: https://rrid.site
  license: CC BY 4.0
  logo_url: https://scicrunch.org/upload/community-logo/rin-resources_69984.png
  name: Research Resource Identifiers
  prefix: rrid
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  resolver_uri_format: https://scicrunch.org/resolver/RRID:$1_$2
  short_name: RRID
tib:
  availability:
    alternate_providers: missing
    contact: present
    description: required
    example: present
    homepage: present
    license: required
    name: required
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: present
  bioregistry_prefix: tib.ts
  contact:
    email: baum@zbmed.de
    github: rombaum
    name: Roman Baum
    orcid: 0000-0001-5246-9351
  description: The TIB Terminology Service is an instance of the EBI OLS.
  example: abcd
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/TIBHannover/TIB-Terminology-Service-Frontend-2.0
    comments: Accepts suggestions through the issue tracker at https://github.com/TIBHannover/TIB-Terminology-Service-Frontend-2.0/issue
    curates: false
    curation: import
    data_repository: https://github.com/EBISPOT/OLS
    imports: true
    issue_tracker: https://github.com/TIBHannover/TIB-Terminology-Service-Frontend-2.0/issues/
    public_version_controlled_data: true
    review_team: inferrable
    scope: general
    status: active
  homepage: https://terminology.tib.eu
  license: CCO
  logo_url: https://terminology.tib.eu/TIB_Logo_W_W.SVG
  name: TIB Terminology Service
  prefix: tib
  provider_uri_format: https://terminology.tib.eu/ts/ontologies/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  short_name: TIB-TS
togoid:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: required
    homepage: required
    license: missing
    name: required
    pattern: required
    provider: required
    search: false
    synonyms: missing
    version: missing
  bioregistry_prefix: togoid
  contact:
    email: ktym@dbcls.jp
    github: ktym
    name: Toshiaki Katayama
    orcid: 0000-0003-2391-0384
  description: TogoID is an ID conversion service implementing unique features with
    an intuitive web interface and an API for programmatic access. TogoID supports
    datasets from various biological categories such as gene, protein, chemical compound,
    pathway, disease, etc. TogoID users can perform exploratory multistep conversions
    to find a path among IDs. To guide the interpretation of biological meanings in
    the conversions, we crafted an ontology that defines the semantics of the dataset
    relations. (from https://togoid.dbcls.jp/)
  download: https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl
  example: AffyProbeset
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/togoid/togoid-config
    comments: null
    curates: false
    curation: import
    data_repository: https://github.com/togoid/togoid-config
    imports: true
    issue_tracker: https://github.com/togoid/togoid-config/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: bio-ontologies
    status: active
  homepage: https://togoid.dbcls.jp/
  license: CC BY 4.0
  name: TogoID
  prefix: togoid
  provider_uri_format: https://togoid.dbcls.jp/#$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
uniprot:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: required
    license: missing
    name: required
    pattern: missing
    provider: required
    search: true
    synonyms: missing
    version: missing
  bibtex: Bateman2021
  bioregistry_prefix: uniprot.resource
  contact:
    email: agb@ebi.ac.uk
    github: bateman-research
    name: Alex Bateman
    orcid: 0000-0002-6982-4660
  description: The cross-references section of UniProtKB entries displays explicit
    and implicit links to databases such as nucleotide sequence databases, model organism
    databases and genomics and proteomics resources.
  download: https://www.uniprot.org/database/?format=rdf
  example: DB-0174
  governance:
    accepts_external_contributions: false
    code_repository: null
    comments: null
    curates: true
    curation: private
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: n/a
    scope: internal
    status: active
  homepage: https://www.uniprot.org/database/
  license: CC BY 4.0
  logo_url: https://www.uniprot.org/uniprot-logo.img.0df091.svg
  name: UniProt Cross-ref database
  prefix: uniprot
  provider_uri_format: https://www.uniprot.org/database/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: UniProt
wikidata:
  availability:
    alternate_providers: present
    contact: present
    description: required
    example: present
    homepage: present
    license: present
    name: required
    pattern: present
    provider: present
    search: true
    synonyms: missing
    version: present
  bibtex: Waagmeester2020
  bioregistry_prefix: wikidata.property
  contact:
    email: info@wikidata.org
    github: null
    name: WikiData Support
    orcid: null
  description: An open, community-curated knowledgebase that contains several properties
    corresponding to resources listed in other biomedical registries.
  example: P683
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: open-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: inferrable
    scope: general
    status: active
  homepage: https://www.wikidata.org
  license: CC0
  logo_url: https://upload.wikimedia.org/wikipedia/commons/6/66/Wikidata-logo-en.svg
  name: Wikidata Property
  prefix: wikidata
  provider_uri_format: http://www.wikidata.org/entity/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: Wikidata
wikidata.entity:
  availability:
    alternate_providers: present
    contact: present
    description: required
    example: present
    homepage: present
    license: present
    name: required
    pattern: present
    provider: present
    search: true
    synonyms: missing
    version: present
  bibtex: Waagmeester2020
  bioregistry_prefix: wikidata.entity
  contact:
    email: info@wikidata.org
    github: null
    name: WikiData Support
    orcid: null
  description: An open, community-curated knowledgebase that contains several properties
    corresponding to resources listed in other biomedical registries.
  example: Q81661651
  governance:
    accepts_external_contributions: true
    code_repository: null
    comments: null
    curates: true
    curation: open-review
    data_repository: null
    imports: false
    issue_tracker: null
    public_version_controlled_data: false
    review_team: inferrable
    scope: general
    status: active
  homepage: https://www.wikidata.org
  license: CC0
  logo_url: https://upload.wikimedia.org/wikipedia/commons/6/66/Wikidata-logo-en.svg
  name: Wikidata Entity
  prefix: wikidata.entity
  provider_uri_format: http://www.wikidata.org/entity/$1
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  short_name: Wikidata (E)
zazuko:
  availability:
    alternate_providers: missing
    contact: missing
    description: missing
    example: missing
    homepage: missing
    license: missing
    name: missing
    pattern: missing
    provider: present
    search: true
    synonyms: missing
    version: missing
  bioregistry_prefix: zazuko
  contact:
    email: ktk@netlabs.org
    github: ktk
    name: Adrian Gschwend
    orcid: 0000-0002-2079-9636
  description: This service fills a gap between services like prefix.cc and LOV or
    looking up the original vocabulary specification. Not all vocabularies (or schema
    or ontology, whatever you want to call them) provide an HTML view. If you resolve
    some of the common prefixes all you get back is some RDF serialization which is
    not ideal. (from <https://prefix.zazuko.com/about>)
  download: https://prefix.zazuko.com/api/v1/prefixes
  example: frbr
  governance:
    accepts_external_contributions: true
    code_repository: https://github.com/zazuko/prefix-server
    comments: null
    curates: true
    curation: open-review
    data_repository: https://github.com/zazuko/rdf-vocabularies
    imports: true
    issue_tracker: https://github.com/zazuko/rdf-vocabularies/issues
    public_version_controlled_data: true
    review_team: inferrable
    scope: semantic web
    status: active
  homepage: https://prefix.zazuko.com/
  license: MIT
  logo_url: https://prefix.zazuko.com/_nuxt/img/zazuko-logo.2dc686c.svg
  name: Zazuko Prefix Server
  prefix: zazuko
  provider_uri_format: 'https://prefix.zazuko.com/prefix/$1:'
  qualities:
    automatable_download: true
    bulk_data: true
    no_authentication: true
    structured_data: true
  resolver_type: lookup
  resolver_uri_format: https://prefix.zazuko.com/$1:$2
  short_name: Zazuko
