{"configurations":[{"id":"asmo","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/OCDO/asmo/raw/refs/heads/main/asmo.owl","creator":["Abril Azócar Guzmán"],"preferredPrefix":"asmo","title":"Atomistic Simulation Methods Ontology","description":"ASMO is an ontology that aims to define the concepts needed to describe commonly used atomic scale simulation methods, i.e. density functional theory, molecular dynamics, Monte Carlo methods, etc. ASMO uses the Provenance Ontology (PROV-O) to describe the simulation process. (from repository) Licensed under CC-BY-4.0.","uri":"https://purls.helmholtz-metadaten.de/asmo","homepage":"https://purls.helmholtz-metadaten.de/asmo","mailing_list":"a.azocar.guzman@fz-juelich.de","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://purls.helmholtz-metadaten.de/asmo/"]},{"id":"chebi","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/chebi.obo","creator":["Adnan Malik"],"preferredPrefix":"CHEBI","title":"Chemical Entities of Biological Interest","description":"Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds. Licensed under CC-BY-4.0.","uri":"http://www.ebi.ac.uk/chebi","homepage":"http://www.ebi.ac.uk/chebi","mailing_list":"amalik@ebi.ac.uk","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/CHEBI_"]},{"id":"cheminf","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/cheminf.owl","creator":["Egon Willighagen"],"preferredPrefix":"CHEMINF","title":"Chemical Information Ontology","description":"The chemical information ontology (cheminf) describes information entities about chemical entities. It provides qualitative and quantitative attributes to richly describe chemicals. Licensed under CC0-1.0.","uri":"https://github.com/semanticchemistry/semanticchemistry","homepage":"https://github.com/semanticchemistry/semanticchemistry","mailing_list":"egon.willighagen@gmail.com","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://semanticscience.org/resource/CHEMINF_"]},{"id":"chmo","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"http://purl.obolibrary.org/obo/chmo.obo","creator":["Colin Batchelor"," Philip Strömert","Noura Rayya"],"preferredPrefix":"CHMO","title":"Chemical Methods Ontology","description":"CHMO, the chemical methods ontology, describes methods used to Licensed under CC-BY-4.0.","uri":"https://github.com/rsc-ontologies/rsc-cmo","homepage":"https://github.com/rsc-ontologies/rsc-cmo","mailing_list":"batchelorc@rsc.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/CHMO_"]},{"id":"climoo.picco","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/ClimOO/ClimOO-Ontology/raw/refs/heads/main/climoo-picco.ttl","creator":["Giorgio Ubbiali"],"preferredPrefix":"climoo.picco","title":"ClimOO - Plastics Interconnecting with Climate Change Ontology","description":"The Plastics Interconnecting with Climate Change Ontology (PICCO) module extends PlasticO and ClimOO-SDC2 modules to represent impacts of and interrelations between (micro-)plastic pollution and climate change. A particular emphasis is dedicated such to phenomena with respect to soils.","uri":"https://github.com/ClimOO/ClimOO-Ontology","homepage":"https://github.com/ClimOO/ClimOO-Ontology","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.w3id.org/climoo/climoo-picco#"]},{"id":"climoo.piccomela","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/ClimOO/ClimOO-Ontology/raw/refs/heads/main/climoo-piccomela.ttl","creator":["Giorgio Ubbiali"],"preferredPrefix":"climoo.piccomela","title":"ClimOO - Plastics Interconnecting with Climate Change Ontology - mela module","description":"The PICCOmela module applies the Plastics Interconnecting with Climate Change Ontology (PICCO) module to agriculture systems, especially to apple production. The main use case of reference is the local agricultural production of apple in South Tyrol (Italy).","uri":"https://github.com/ClimOO/ClimOO-Ontology","homepage":"https://github.com/ClimOO/ClimOO-Ontology","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.w3id.org/climoo/climoo-piccomela#ClimOO_"]},{"id":"climoo.plastico","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/ClimOO/ClimOO-Ontology/refs/heads/main/climoo-plastico.ttl","creator":["Giorgio Ubbiali"],"preferredPrefix":"climoo.plastico","title":"ClimOO - Plastic Ontology","description":"The Plastics Ontology (PlasticO) module centers on representing polymer molecules, plastic materials, pieces of plastic, and plastic objects, along with corresponding life cycles and pollution processes. Emphasis is also dedicated to relevant assessment devices and related data, especially with regard to sustainability. Licensed under CC-BY-4.0.","uri":"https://www.w3id.org/climoo/climoo-plastico","homepage":"https://www.w3id.org/climoo/climoo-plastico","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.w3id.org/climoo/climoo-plastico#ClimOO_"]},{"id":"climoo.sdc2","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/ClimOO/ClimOO-Ontology/refs/heads/main/climoo-sdc2.ttl","creator":["Giorgio Ubbiali"],"preferredPrefix":"climoo.sdc2","title":"ClimOO - Sustainable Development and Climate Ontology","description":"The ClimOO SDC2 module forks the Sustainable Development and Climate (SDC) Ontology, updating the proposed models. The SDC2 module centers on climate and climate change, especially with regard to environmental features and related interconnections. Emphasis is also dedicated to relevant policies.","uri":"https://github.com/ClimOO/ClimOO-Ontology","homepage":"https://github.com/ClimOO/ClimOO-Ontology","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://www.w3id.org/climoo/climoo-sdc2#"]},{"id":"emmo","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/emmo-repo/EMMO/master/emmo.ttl","creator":["Jesper Friis"],"preferredPrefix":"emmo","title":"Elementary Multiperspective Material Ontology","description":"EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub) Licensed under CC-BY-4.0.","uri":"https://emmo-repo.github.io","homepage":"https://emmo-repo.github.io","mailing_list":"jesper.friis@sintef.no","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://emmo.info/emmo#EMMO_"]},{"id":"mlips","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/danielhz/mlips-ontology/raw/refs/heads/main/artifacts/ontology/mlips.owl","creator":["Daniel Hernández"],"preferredPrefix":"mlips","title":"An Ontology for Machine Learning Interatomic Potentials","description":"An OWL ontology capturing the concepts needed to describe machine learning interatomic potentials: algorithm families, hyperparameters, training datasets with DFT provenance, and published benchmarks. Licensed under CC-BY-4.0.","uri":"https://kg.informatik.uni-stuttgart.de/mlips/_ds/mlips","homepage":"https://kg.informatik.uni-stuttgart.de/mlips/_ds/mlips","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://w3id.org/mlips#"]},{"id":"molsim","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/CPCLab/molsim-ontology/raw/refs/heads/main/molsim.obo","creator":["Fathoni A. Musyaffa"],"preferredPrefix":"MOLSIM","title":"Molecular Simulation Ontology","description":"The primary goal of this ontology is to standardize the representation of molecular simulation data, processes, and methodologies across disparate simulation platforms, engines (e.g., GROMACS, AMBER, NAMD), and analysis tools, while ensuring these terms are interoperable with existing life sciences ontologies Licensed under CC-BY-4.0.","uri":"https://github.com/CPCLab/molsim-ontology","homepage":"https://github.com/CPCLab/molsim-ontology","mailing_list":"f.musyaffa@fz-juelich.de","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/MOLSIM_"]},{"id":"mop","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"https://raw.githubusercontent.com/rsc-ontologies/rxno/master/mop.obo","creator":["Colin Batchelor"],"preferredPrefix":"MOP","title":"Molecular Process Ontology","description":"MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. Licensed under CC-BY-4.0.","uri":"https://github.com/rsc-ontologies/rxno","homepage":"https://github.com/rsc-ontologies/rxno","mailing_list":"batchelorc@rsc.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.obolibrary.org/obo/MOP_"]},{"id":"ontoiochem","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/gabisdias/ontoioChem/raw/refs/heads/main/ontology/ontoiochem.owl","creator":["Gabriela Dias-da-Silva"],"preferredPrefix":"ontoiochem","title":"OntoIochem Core Ontology","description":"OntoIochem is an ontology designed to provide a semantic layer for the ioChem-BD platform and to support the consistent representation, discovery, and interoperability of computational chemistry data. Its development builds upon existing semantic resources, including the Gainesville ontology, which provided an important foundation for the representation of computational chemistry concepts and terminology. OntoIochem describes four main conceptual areas: the Molecular Concept, representing molecular structures and the properties that characterize them; the Calculation Concept, representing computational methodologies, software tools, calculation metadata, and derived results; the Publication Concept, representing information associated with scientific publications and research outputs, including data collections and manuscripts; and auxiliary concepts, such as units of measurement and values, which support the precise and machine-readable representation of scientific information. OntoIochem is designed to align with established computational chemistry ontologies and commonly used scientific terminologies, promoting semantic interoperability, reuse, and integration with existing resources and scientific data ecosystems. (from ontology)","uri":"http://purl.org/iochem/ontoiochem","homepage":"http://purl.org/iochem/ontoiochem","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://purl.org/iochem/ontoiochem#"]},{"id":"pmdco","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/materialdigital/core-ontology/raw/refs/heads/main/pmdco.owl","creator":["Jörg Waitelonis"],"preferredPrefix":"pmdco","title":"Platform Material Digital Core Ontology","description":"The PMD Core Ontology (PMDco) is a comprehensive framework for representing knowledge that encompasses fundamental concepts from the domains of materials science and engineering (MSE). The PMDco has been designed as a mid-level ontology to establish a connection between specific MSE application ontologies and the domain neutral concepts found in established top-level ontologies. The primary goal of the PMDco is to promote interoperability between diverse domains. PMDco's class structure is both understandable and extensible, making it an efficient tool for organizing MSE knowledge. It serves as a semantic intermediate layer that unifies MSE knowledge representations, enabling data and metadata to be systematically integrated on key terms within the MSE domain. With PMDco, it is possible to seamlessly trace data generation. By building on this foundation, PMDco facilitates the integration of data from various sources and the creation of complex workflows. In summary, PMDco is a valuable tool for researchers and practitioners in the MSE domains. It provides a common language for representing and sharing knowledge, allowing for efficient collaboration and promoting interoperability between diverse domains. Its design allows for the systematic integration of data and metadata, enabling seamless traceability of data generation. Overall, PMDco is a crucial step towards a unified and comprehensive understanding of the MSE domain. PMDco at GitHub: https://github.com/materialdigital/core-ontology Documentation: https://materialdigital.github.io/core-ontology/docs/ Licensed under CC-BY-4.0.","uri":"https://materialdigital.github.io/core-ontology/","homepage":"https://materialdigital.github.io/core-ontology/","mailing_list":"joerg.waitelonis@fiz-karlsruhe.de","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://w3id.org/pmd/co/PMD_"]},{"id":"psdi.voc","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://github.com/PSDI-UK/metadata/raw/refs/heads/main/psdi-voc.ttl","creator":["Aileen Day"],"preferredPrefix":"psdiVoc","title":"PSDI vocabulary","description":"SKOS vocabulary defining nomenclature used within the PSDI project and the resulting PSDI infrastructure and its platform.","uri":"https://guidance.psdi.ac.uk/docusaurus-pages/docs/guidance/metadata/psdi-metadata/psdi-terminology","homepage":"https://guidance.psdi.ac.uk/docusaurus-pages/docs/guidance/metadata/psdi-metadata/psdi-terminology","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://metadata.psdi.ac.uk/psdi-voc#"]},{"id":"pubchem.vocabulary","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://rdf.ncbi.nlm.nih.gov/pubchem/vocabulary.owl","creator":["Evan E Bolton"],"preferredPrefix":"pubchem.vocabulary","title":"PubChem Vocabulary","description":"The schema used by PubChem RDF","uri":"https://pubchem.ncbi.nlm.nih.gov/docs/rdf-uri","homepage":"https://pubchem.ncbi.nlm.nih.gov/docs/rdf-uri","mailing_list":"bolton@ncbi.nlm.nih.gov","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://rdf.ncbi.nlm.nih.gov/pubchem/vocabulary.owl#"]},{"id":"qudt","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"http://qudt.org/schema/qudt/","creator":["Steve Ray"],"preferredPrefix":"qudt","title":"Quantities, Units, Dimensions, and Types Ontology","description":"Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types. Licensed under CC-BY-4.0.","uri":"https://qudt.org","homepage":"https://qudt.org","mailing_list":"steve.ray@qudt.org","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://qudt.org/schema/qudt#"]},{"id":"rhea","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://w3id.org/biopragmatics/resources/rhea/rhea.obo","creator":["Anne Morgat","Jerven Bolleman","Alan Bridge"],"preferredPrefix":"rhea","title":"Rhea reaction","description":"Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB. Licensed under CC-BY-4.0.","uri":"https://www.rhea-db.org/","homepage":"https://www.rhea-db.org/","mailing_list":"Anne.Morgat@sib.swiss","label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://rdf.rhea-db.org/"]},{"id":"rxno","reasoner":"none","oboSlims":false,"is_foundary":true,"ontology_purl":"https://github.com/rsc-ontologies/rxno/raw/master/rxno.obo","creator":["Colin Batchelor"],"preferredPrefix":"RXNO","title":"Name Reaction Ontology","description":"RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization. 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Licensed under MIT.","uri":"https://liusemweb.github.io/mdo/full/1.0/index.html#namespaces","homepage":"https://liusemweb.github.io/mdo/full/1.0/index.html#namespaces","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["https://w3id.org/mdo/"]},{"id":"worldavatar.compchem","reasoner":"none","oboSlims":false,"is_foundary":false,"ontology_purl":"https://raw.githubusercontent.com/TheWorldAvatar/ontology/refs/heads/main/ontology/ontocompchem/ontocompchem.owl","creator":["Converted to OWL by Charles Tapley Hoyt (cthoyt@gmail.com), no primary contact information is available."],"preferredPrefix":"worldavatar.compchem","title":"WorldAvatar computational chemistry ontology","description":"Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. 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(from https://nfdi4cat.org/services/ontologie-sammlung/) Licensed under MIT.","uri":"https://theworldavatar.io","homepage":"https://theworldavatar.io","mailing_list":null,"label_property":"https://www.w3.org/2000/01/rdf-schema#label","definition_property":["http://purl.org/dc/terms/description"],"synonym_property":["http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym","http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym","http://www.geneontology.org/formats/oboInOwl#hasCloseSynonym"],"hierarchical_property":["https://www.w3.org/2000/01/rdf-schema#subClassOf"],"hidden_property":[],"base_uri":["http://theworldavatar.com/ontology/ontocompchem/ontocompchem.owl#"]}],"missing":["bioregistry","goldbook","ontmm","sssom","voc4cat"]}